Sulfurihydrogenibium sp. YO3AOP1: SYO3AOP1_0937
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Entry
SYO3AOP1_0937 CDS
T00715
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sul
Sulfurihydrogenibium sp. YO3AOP1
Pathway
sul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SYO3AOP1_0937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sul03400
]
SYO3AOP1_0937
Enzymes [BR:
sul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SYO3AOP1_0937
DNA repair and recombination proteins [BR:
sul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SYO3AOP1_0937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UvrB_inter
RecG_dom3_C
Ribosomal_S15
Motif
Other DBs
NCBI-ProteinID:
ACD66564
LinkDB
All DBs
Position
complement(972058..974874)
Genome browser
AA seq
938 aa
AA seq
DB search
MKVYTGNSSYCEYLLIQKEKPLFLITDSEKSAKESFLNLKAYKDFFKKDLEIIHFPSSQE
KLDLLSQIERNYAIYKILAGKNWILVFSKDALNVKVRTKENFLKDIINIKKSGELNREFL
IEKLYKLGYIREEFPENEGEFSVRGGFLSINIPKVGIVDIDFFGDTIENIFLKSKILTRK
EIEEISILPLYDFNIKSQTPLIFEDEESTFFRDYLKNDIYTLDIYEDLNLPIKGQFFSKF
SNPEVGTIKDITQEFAVYKIPLKKELVLLNEKTAFLLEVEEKLELDVEPLKEGDYIIHED
FGIGIYRGIETREIRGKVYDFMILEYSGGEKVYVSYLHFDKIHKYKTDSIIQIDKIGGTS
WRNLKKKVKESLKNIAKNLLEIYSKRQNIYRPPLKTDDELISKFEREFPFVETPDQIKAI
KDIKSDFLKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQALLLVPTTVLAYQHYKKL
KERLEPYGIIVKNLSRLKSKKENDNTIKAFEEGKIDVLVATHKILHTNLSFNKLELLVID
EEHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKDISVLNTPPEGRYEIKTY
VSNFDEELIKKAIEFEIDRNGQVFYLHNRIETIKETADFLKNLVKKAKVDFIHGKMKPSE
IEKKIIDFLEGKTNVLISTSIIETGIDIPTANTLIVDRADLFGLAQLYHLRGRVGRGNIQ
AYCYLIVPKEITKDAKRRIDTLLKLTRPGSGLKVSIEDMQIRGPGNILGVEQSGFIKSLG
FDYYVKLLKEAINEERGEKEFEAEIEIDFDYYIPQDFIKDPTERLNIYMAVSKAEDYEEI
EKLRKYLKEFYNDLPKAFDLYLVISEIKKLLSRLKIKKLHMKSDLAYLQLSDQTNPEVIL
KLIENLNPVKIEKEKIIFQVESLEELKEKILEGVKSQK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatacacaggcaacagttcatattgtgaatatttacttattcaaaaagagaag
cctttatttttgataacagactctgaaaagtctgcaaaagaaagctttttaaatcttaag
gcttataaagatttctttaaaaaagaccttgaaattattcattttccatcttctcaagaa
aaacttgaccttttaagtcagattgagagaaattatgctatctataaaatcttagcagga
aaaaattggattttagtattttccaaagatgctttaaatgtaaaggttagaacaaaagaa
aatttcttaaaagacattatcaatataaagaaaagcggggagttaaacagagaatttttg
atagaaaaactttataaacttggatacataagagaagaatttccagaaaatgaaggagaa
ttttctgtaagaggtggctttttatctatcaacattccaaaggtaggcatagtagatata
gattttttcggtgatacaatagaaaacatctttttaaaatcaaaaatcttaacaagaaaa
gaaatagaagaaatatccattctgccactttatgactttaacatcaaatcacaaacgcca
cttatttttgaagatgaagaaagtaccttttttagagattatttaaaaaacgatatttac
accttagatatctatgaagacttaaatttacctatcaagggtcaatttttctcaaaattt
tctaatcctgaggttggaactataaaagatattacacaagagtttgctgtctataaaatt
ccattaaaaaaagaacttgtactacttaatgaaaaaacggctttcctgctagaggttgaa
gaaaagttagagttagatgttgagcctttaaaggaaggtgattatataattcatgaagat
tttggaataggtatctacagagggatagagacaagagagattagaggaaaagtttatgat
tttatgattcttgagtattcaggcggtgagaaggtttatgtatcatatcttcattttgat
aaaattcataaatacaaaaccgattctatcattcagattgataaaatcggcggtacttct
tggagaaatctaaagaaaaaagttaaagagtctttaaaaaatattgcaaaaaatctgtta
gagatctattcaaaaagacaaaatatatacagaccaccattaaaaacagatgatgagcta
ataagcaagtttgaaagagagtttccatttgtagaaacaccagaccagataaaagccata
aaagacataaaaagcgattttttaaagccaaagccaatggaaaggctaatatgtggagat
gttggctttggtaaaaccgaagtagccatcagaggtatttttatatctgtaataaatgga
taccaagctctgcttttggttccaactactgtccttgcttatcagcattataaaaaatta
aaagaaaggcttgaaccttatggaataatcgtaaaaaatctttcaagattaaaatcaaaa
aaggaaaatgataatacaataaaagcttttgaagaaggaaaaatagacgttttggtagca
actcataaaatcttacatactaacctatcttttaataagcttgagctccttgtgattgat
gaagagcatagatttggagtaaaagcaaaagaaaaaataagacagataagagaaagtgta
gatactttatacttaactgcaacgccaattccaagaacattaaacatggcactttcagga
ctaaaagatatatcagttttaaacacaccaccggagggaaggtatgagataaaaacatat
gtttcaaattttgatgaagagcttataaaaaaagccattgaatttgaaatagacagaaac
ggacaggttttttatctacataacagaatagagacaatcaaagaaacagcagatttttta
aaaaacttagtcaaaaaggcaaaagtagactttatacatggtaaaatgaagccttccgag
attgaaaaaaagattattgatttcttagaagggaaaacaaacgttttaatttctacttct
attattgaaacaggaatagatattccaacagccaatactttaatcgtagatagagctgat
ttgtttggacttgcacagctttatcatttaagaggaagggtcggaagaggtaatattcaa
gcttactgctatttgatagttccaaaagaaataacaaaagatgcaaaaagaagaatagat
acacttttaaaactaacaaggccgggctcaggcttaaaagtatctattgaagatatgcaa
ataagaggaccagggaatattctcggggttgagcaaagcggttttataaaatccttaggc
tttgattactacgttaaacttttaaaagaagctatcaacgaagaaaggggagagaaagag
tttgaagccgaaatagagatagattttgattattacattccacaagattttattaaagac
ccgactgaaaggttaaatatatacatggctgtgtcaaaagcagaagattatgaagagata
gaaaaattaagaaaatacttaaaagaattttacaatgatttaccaaaagcatttgattta
tacttagttatctcagagataaaaaagttactatcccggttaaaaataaaaaaacttcat
atgaaatcagatttagcttacttacaactatcagaccaaacaaatccagaagtaatatta
aagcttatagaaaatctaaatccagtcaaaattgaaaaagaaaaaatcattttccaggta
gaaagcttagaagagctaaaagagaaaatattggaaggcgtaaagagtcaaaagtga
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