Sulfurimonas sp. CVO: CVO_02180
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Entry
CVO_02180 CDS
T06373
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sulc
Sulfurimonas sp. CVO
Pathway
sulc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sulc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVO_02180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulc03400
]
CVO_02180
Enzymes [BR:
sulc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVO_02180
DNA repair and recombination proteins [BR:
sulc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVO_02180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
QHG90716
LinkDB
All DBs
Position
423024..426014
Genome browser
AA seq
996 aa
AA seq
DB search
MSQNTLFQYYKTDKKQDLELLICQDSKEAHELENVAKFFKQDVLVFPDFRAAFGDDLRVY
KEELHQLFSCLRRYYALKKKPLIISPLKTLLFYLPNESLFDSVSLEFGAKIELKKFQKKM
LFWGYNFVDMVQVEGEISFRGDIIDIYPPSSKMPLRISLFDDEIEQIKYFELESQRTQKD
EIESIEITPAFYSLSEEKFDSLNEKIKQSEFNSLVKDIASLGLWYLGDSAINFLEDKNAK
LVRNLDALLTDAYVLNKPMLSRESFDLEILPTSDDFKELAVTDVHSLLRVHKDKKTTIIA
SNEAVVKQAGLFDLNKIEIVYAPYILNILSKDELVISLNKPQKAKRRRKSSILLDDLKTG
DYVVHEDYGVGIFETIEQTEILGGVKDFIVIKYVGDDKILLPVENLDAIDRYIASSGSIP
VLDRLGKGSFGKLKESVKKRLMEIAGQIVNTAAARELIQAPKISIDTNELKEFQKLSGFE
YTDDQTQSINEIIAQMSSGHIMDRLLSGDVGFGKTEVAMNTIFAAYKSGFQSALIVPTTL
LSAQHYRSLHERFDAFGIKCSKLDRFVSAKDKKNIIKALASGDLDVVVGTHTLFDLDFKN
LGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKTMSQLLTPPSE
REPVRTFVKEYEEKFIKEIILREIRRGGQIFYVHNSIDHMPIKFGELKALLPELRVVMLH
SKISATETEKELLKFEAGEYDLMLATSIIESGIHMPRVNTIIVDGADRFGMADLHQLRGR
VGRGKIEGFAYFIVENRENLTDDAKKRLLALESNSFLGSGSILAYHDLEIRGGGNLVGDA
QSGHIKNIGYSLYLRMLEDAIKLLSNQAQSQKIKVDIKLTISAYISDEVVKEDRLRLDIY
RRLSACEQSVEIYEIQEEVIDRFGEIDTPTKQFFELMVIKLLSLEKKIKSVTNYGQNITF
TYMDEKKESIKSDSKDDDDIIRATLLYLRNNTLKAV
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaaatacacttttccaatactataaaactgataaaaaacaagatttagaactc
ttgatctgtcaagactccaaagaagcccatgaacttgaaaatgtagctaaattcttcaag
caggatgttttggtttttcccgactttagagctgcttttggagatgatttaagagtatat
aaagaggagcttcatcaacttttttcttgtttgagaagatattatgctctgaaaaaaaag
cctttgattatatcgcctcttaagacacttttgttctatctgccaaatgagagtttgttt
gactctgtttctttggagtttggtgcaaagatagagctgaaaaaatttcagaaaaagatg
ctgttttggggatacaattttgtagatatggtgcaagttgagggggagatatcttttcgc
ggagatattatagacatatatccgccttcaagtaaaatgcctttaagaatttcacttttt
gatgatgagatagagcagataaagtattttgaattagagtctcaaagaacccagaaagac
gagattgagagcattgaaataacacctgctttttactctttgagcgaggaaaagtttgac
agtttaaatgaaaaaatcaaacagagtgaatttaactctttagtcaaagatatagcatct
ttgggtttatggtatcttggtgatagtgccataaattttttagaggataaaaacgcaaaa
ttagtcagaaatttagatgctcttttgactgatgcttatgtgcttaataaacctatgctc
tcaagagagtcttttgatcttgaaattttaccgacttctgatgattttaaagagctggcc
gtaacagatgttcactctcttttaagagtgcataaagataaaaaaacaactattattgct
tcaaatgaggctgttgtaaagcaggccggattgtttgatttaaataagattgagatagtt
tatgctccatatattttaaatattctcagtaaagatgagcttgttatttctcttaataaa
cctcaaaaggctaaacgaagaagaaaaagctcaattttgcttgatgatttaaaaacgggt
gattatgttgttcatgaagattatggcgtcggtatatttgaaaccatagagcagactgag
attttaggcggtgttaaagattttattgttatcaaatatgtcggtgatgataaaattttg
ctccccgtggaaaatttagatgcgatagaccgctatattgcatcaagcggttcgattcct
gttttggacagacttggtaaagggagttttggcaaactaaaagagagtgttaaaaaaagg
cttatggagattgcaggtcaaatagtcaatactgcagctgcaagagagttgattcaagct
cctaagattagcatcgataccaatgaactaaaagagtttcaaaaactctcaggttttgag
tatacagatgaccagacacaatctatcaatgagataattgcgcagatgagttccgggcat
attatggacaggcttcttagcggagatgtcggttttggcaaaactgaagtagctatgaac
accatatttgcggcatataaatcaggttttcagtcagctcttattgttcctacaacactt
ctttcggcgcagcactaccgttcactgcatgaaagatttgatgcttttggcattaaatgc
tcaaaactcgatcgctttgtaagcgcaaaagataaaaaaaatattattaaagctttggca
agcggagatctggatgtggttgtcgggacacatactctttttgatctggattttaaaaat
ctgggcgttgttattatagatgaagagcataagtttggcgtaaagcaaaaagagaagata
aaagagctttatcacaatgtgcatcttcttagcatgagtgcaacaccgattccccgctct
ctcaatcaggcacttagttcgataaaaactatgtcacagctgcttactccgccaagcgag
agagagccggtgagaacatttgttaaagagtatgaagaaaaatttattaaagagattatt
ttaagagagattagacgcggcgggcagatattttatgttcataattcaattgatcatatg
ccgataaagtttggcgaattaaaagcacttctgccggagttgagagtcgtaatgcttcat
tcaaaaatttcagcaacagaaacagagaaagagctcttaaagtttgaagcaggcgagtat
gatttgatgcttgctacctctattatagagtcaggtattcatatgcctcgtgtaaatacc
ataatagttgacggtgcagacagatttggaatggcagatctacatcagctgcgaggtcgc
gtaggaagaggaaagatagaaggatttgcatattttattgtagaaaatagagaaaattta
acagatgatgcaaaaaaaagacttttagctcttgagtcaaactcatttttgggaagcggc
tcaattttagcataccatgatttagagattcgaggcggcggaaacctggtaggcgacgct
cagagcgggcatattaaaaatataggctactctttgtatcttagaatgttagaagatgct
ataaaattactgagcaatcaggcacagagccaaaagataaaggttgatataaaactcacc
atctcagcttatatttctgatgaggttgtaaaagaggatagacttcgtttggatatctat
agacgcctctcggcgtgtgagcagagtgtagagatatatgagatacaagaggaagtgata
gacagatttggggagattgatactcctacaaaacagttttttgaactaatggttattaaa
cttttaagtctagaaaaaaagataaaaagtgtaacaaattatggacaaaatattacattt
acatatatggatgagaaaaaagagagcataaaatcagactccaaagatgatgatgacatt
attagagcaacgcttctttatcttagaaacaatacattaaaggcagtatga
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