Sulfitobacter sp. D7: B5M07_07060
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Entry
B5M07_07060 CDS
T05714
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
suld
Sulfitobacter sp. D7
Pathway
suld03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
suld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B5M07_07060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suld03400
]
B5M07_07060
Enzymes [BR:
suld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B5M07_07060
DNA repair and recombination proteins [BR:
suld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B5M07_07060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AYE85889
UniProt:
A0A386TDN1
LinkDB
All DBs
Position
complement(1456228..1458687)
Genome browser
AA seq
819 aa
AA seq
DB search
MAKSPDRLANYNAKRDFETTAEPRGQIGSGAGQSFVVQKHDATRLHYDFRLEWEGVLLSW
AVTKGPSPDPSEKRLAVRTEDHPLDYGGFEGTIPKGQYGGGTVMLWDRGTWMPQGDVAKG
LKDGKLKFTLQGQQMQGGWTLVRMRGQEKRENWLLIKERDDYARDVPDGLTKGTARSITT
GRTMAEIAKDAPAGDVADPEPKRKGKNPSFVKPQLATLVSDAPEGEDWMHETKFDGYRCL
VSLGKGGARLYTRSGKDWTDKFNGLGHAFDPLPCDRALLDGEVMAAKINGSAFSSLQKAL
KEGHPLVFYAFDLLSLDGDDFRSDAQKDRRARLAKLLSGVPAGGPLRLSEHVVGHGPEVF
DRACKAGAEGIISKRIDAPYSGRRSKNWLKVKCTRRQEFVIIGYSPSDKKGRAFASLLLG
SHEGGELRYKGRVGTGFSEAVMADLARAMTARKTPPASDVPAEVARDAKWVRADLVAEVD
FTEFTADGVIRHGSFLGLRQDKDAGQVTLEEPQEEPKMGDDSKIGGVQISNADRKVFPDA
GCTKGDVARHYARVGPRMIELMGHRPLSLFRCPSGIDGQCFFQKHDSGGMPDALSRVSIE
ESDGDAADYLYATRPESLIAAAQMGSLEYHIWGARVDRLDRPDRLVFDLDPDEGLDWPDV
RAAAFELRDALAALGLQSGAIVTGGKGVHVWLALRRTRGWETVKLFSKTFAHVMAAQNPD
RYVATMSKAKRKGRIFIDWLRNERGSTAIAPYSLRARPGAPVAVPVTWEELGNLDSANGF
RMGDIAARLDRPCPALAVQDDLQSLTDGVIKKLQAWSES
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcccccgacaggcttgccaattataacgccaagcgtgatttcgagacgaca
gccgaaccccgtggccagatcggcagcggcgcgggccaaagcttcgttgtccaaaaacat
gacgccacccgcctgcactatgactttcgtcttgaatgggaaggggtgctgctgagctgg
gccgtcaccaaaggcccctctcccgacccatccgaaaagcgtcttgccgtgcggacagag
gatcacccgctcgactacggcgggttcgaagggacgatcccaaaggggcaatatggcggc
ggcacggtgatgctctgggaccggggcacttggatgccgcagggcgatgtcgccaaggga
ttgaaggacggcaagctcaaattcacgctgcaaggccagcagatgcagggcggttggaca
ctggtgcggatgcggggtcaggaaaagcgtgagaactggctgctgatcaaggaacgagac
gactatgcccgcgatgtaccggatgggctgaccaagggcaccgcccggtcgatcaccaca
ggccgcaccatggcggaaatcgccaaggatgcccccgcgggagatgtcgcggacccagag
cccaagcgcaaaggcaagaaccccagcttcgtcaaaccacagcttgccacgctcgtttcc
gacgcgcccgagggcgaggattggatgcatgagacgaaatttgacggctaccgctgtctg
gtttctctcggcaagggcggtgcgcggctctatacccgctcgggcaaggattggaccgac
aaattcaacggacttggtcatgcttttgatccgctgccctgcgaccgcgccctgctggac
ggagaggtcatggcggccaagatcaatggctctgcgttttcatcgctacaaaaggcgctg
aaagaggggcatccgctggttttttacgctttcgatttgctgtcacttgatggcgatgac
tttcggagcgatgcacaaaaagaccgccgcgcgcgtctggcaaagctgctttccggcgtg
ccagcgggcgggccgttacggctgagcgaacatgttgtcggtcatggccccgaagtcttt
gaccgcgcgtgcaaagccggggccgaggggatcatcagcaaacgtatcgacgcgccctac
tccggcagacgcagcaagaattggctcaaggtcaaatgcacccggcggcaggaattcgtc
atcatcggctattccccctctgacaaaaagggccgcgcctttgcctcgctcctgttgggc
agtcatgaggggggtgaattacgctataaaggccgtgtcggcacggggttttccgaagcg
gtgatggccgatcttgcccgtgccatgaccgcccgcaaaaccccgcccgccagcgacgtg
ccagccgaggttgcgcgggatgccaaatgggtccgcgccgatctggtggccgaggtcgac
tttaccgaattcaccgccgatggcgtgatccgccacggcagttttctgggcctgcgtcag
gacaaggacgccggccaagtgacattggaggaaccgcaggaggagccgaagatgggcgat
gacagcaagatcggcggcgtgcagatcagcaacgccgaccgcaaggttttccccgatgca
ggctgcaccaagggtgacgtggcgcggcattacgcgcgtgtcggcccgcgcatgattgaa
ctcatgggccatcgccccctgtcgctgttccgctgcccctcggggatcgacgggcaatgt
ttctttcaaaaacacgacagtggcgggatgcctgatgcactgtcgcgggtatcgattgag
gaaagcgatggcgacgcggcggattacctctatgccacgcggcccgaaagcctgatcgcg
gcggcgcagatgggcagtctggaatatcatatctggggcgcgcgggttgaccggttggac
cgccccgaccggctggtctttgaccttgaccccgatgaggggctggactggcccgatgtc
cgcgcggcagcctttgagctgcgcgacgcgctggcggctctgggcctgcagtcgggtgcc
atcgtcaccggcggcaagggcgtgcacgtctggctggccttacgccggacacgcggctgg
gagacggtcaagctgttctccaagacctttgcccatgtcatggcggcgcagaaccctgat
cgctatgtcgcgaccatgtccaaggccaagcgcaagggccgcattttcatcgattggctg
cgcaatgaacgcgggtctacggccatcgcgccctattccctgcgcgcgcgccccggtgcg
ccggtcgccgtgccggtaacgtgggaagagttgggaaacctcgacagcgccaacgggttc
cgcatgggcgatatcgccgcgcggctggatcggccctgccccgcgctggcggtgcaagac
gatttgcaatcgctgaccgatggggtgatcaagaagctgcaggcttggtctgaaagctag
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