Sulfitobacter sp. SK012: C1J03_12525
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Entry
C1J03_12525 CDS
T05563
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sulz
Sulfitobacter sp. SK012
Pathway
sulz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sulz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1J03_12525 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sulz03400
]
C1J03_12525 (mfd)
Enzymes [BR:
sulz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1J03_12525 (mfd)
DNA repair and recombination proteins [BR:
sulz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1J03_12525 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_30
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXI46776
UniProt:
A0A345QN89
LinkDB
All DBs
Position
complement(2561218..2564685)
Genome browser
AA seq
1155 aa
AA seq
DB search
MRPSTHITLSGAPEGYDAQLLLRELETAGTPVVHVARDDKRMAAMQAALRFFAPDLPVVT
FPGWDCLPYDRISPNADISAQRMATLAALVHAMPEKFILLTTLGAATQRVPARATLRDAA
FSAQVGNRVDEKALRHFLVRMGFVQSPTVMEPGDYAVRGGIIDIYPPGDLGPVRLDLFGD
TLDGARRFDPATQRTTEKLELVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWLAFFHDTLETLFDYLPKATIALDDQVTPTRLARWESVADQYETRKIA
MANRSKMDSVYKPAPPDGLYLDEAAWDTAVSDRRVIQLVPLAQPTGPQVLDAGGRIGRNF
SPERQQESISLFGALATHINAKLQDGPVLIASYSEGARERLTGLIEDEGLAEAVPIPSAN
RIGKRGLYLAVWALEHGFEADGMSVISEQDVLGDRLIRAPKRKRRAENFLSEVQSLTPGN
LVVHVDHGIGRYLGMEVITAAGAAHECLVLEYAAESKLYLPVENIELLSKYGHEEGLLDK
LGGGAWQSKKAKLKERIREMADKLIRIAAERALRRAPVLEPPPGMWDAFSARFPYTETDD
QMSAIGDVIDDLTSGKPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQ
HYKSFAERFRGFPIEVRQLSRFVSTKDANLTRDGMTKGTVDIVIGTHALLAKGIRFKELG
LLVIDEEQHFGVTHKERLKSMRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRL
AIRTYVSEFDAVTLREALLREHYRGGQSFYVVPRISDLPEIEAFLKEQLPELSYVIAHGQ
MAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRAKLTPLAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGFELYQSMLEEAIAKIRSGELEGLAGDDGQWAPQINLGVPVLIPEIYVPDLDVR
LGLYRRLSELTTKVELEGFAAELIDRFGKLPREVNTLMLVVRIKAMCKRAGIAKLDGGPR
GATIQFHNDKFASPEGLVTFLQDQRGLAKVKDNKIVVRRDWKSDADKIKGGFAIARDLAE
HVIAKEKANKARKVT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagaccatctacccatatcacgctgtccggcgcgcctgagggatatgacgcccagctt
ttgttgcgcgaacttgaaacggccggaaccccggttgtccatgtcgcgcgcgatgacaaa
cggatggcggcaatgcaggccgcactgcggtttttcgcgcctgatttaccggttgtgacc
tttcccggatgggactgcctgccttatgaccgcatttcgcccaatgccgatatttcggcg
cagcgcatggccacacttgcggctttggtgcacgcaatgccggaaaagttcattctgctg
acaacgttgggcgctgccacgcagcgcgttccggcgcgtgccactttgcgggatgctgcg
ttttcagcccaagttggcaaccgcgtcgatgaaaaagcgctgcgccattttctggtccgg
atggggtttgttcaaagcccaacggtgatggagccgggcgactatgccgttcgcgggggc
atcatcgacatttacccgcccggtgatctgggcccggtgcgtctggacttgtttggggac
acactggacggcgcgcgacggtttgaccctgcgactcagcgcaccactgaaaagcttgaa
ctcgttgaactggccccggtgagcgaagtcattctggacgaggccgcaataacgcgtttt
cgccaaaactaccgcatcgaatttggtgcggcaggtactgatgatccgctttatgaagcc
atatcagctggccgcaaacatcaaggcgctgaacattggttggcgtttttccacgacacc
ctcgagacgttatttgactacttacccaaagcgacgattgcgctggatgatcaggtgaca
ccgactcggctggcccgctgggaaagcgtcgcggatcagtatgagacccgcaaaattgcg
atggcaaatcgctcaaagatggacagtgtgtacaaacctgcgccgccagatgggctctat
ctggatgaggccgcgtgggacactgcggtttctgaccggcgcgtgatccaattggttcca
ttggcacagcccacgggtccgcaggttttggatgcaggtgggcgcattgggcgaaatttc
tcaccagagcgccagcaggaatctattagcctttttggggctttggccacgcatattaac
gcaaagcttcaagatggtccggtgcttattgcgagctattccgaaggcgcgcgtgaacgc
cttacagggctaatcgaagacgaaggcctggccgaggccgtcccaatcccaagcgcaaac
cgcatcggcaaacgcgggctctatctcgccgtttgggcgttggagcatgggtttgaggcg
gacgggatgtcggttatttccgaacaggacgttttgggcgaccgcttgatccgcgctccg
aaacgcaaacgccgggccgagaactttctgtccgaagtccaaagcctgactcctggcaat
ctggttgttcacgtggatcacggcattggccgctatctgggcatggaagtgatcacggct
gcgggcgccgcgcatgagtgtctggtgctggaatatgctgcagaatcgaaactgtacttg
cctgtcgagaacatcgagctgctgtcgaaatatggccatgaggaagggctgctcgacaaa
ctaggcggcggcgcgtggcaatccaaaaaggccaagcttaaggaacgcatccgcgagatg
gccgacaagctgatccgtattgccgctgagcgggcgttgcgcagagcccccgtacttgag
ccgccccccggcatgtgggacgcgttttctgcacgcttcccttataccgaaaccgacgat
cagatgagcgccatcggcgatgtcatcgatgatttaaccagcggcaaaccgatggaccgt
ctggtgtgcggcgatgtgggctttggcaaaaccgaagtcgcgatgcgcgcggcctttgtg
gcggccatgtcgggcgttcaggtcgcagtgatcgcgccgacgacattgctggcacgtcag
cactacaagagctttgcagaacgctttcgcggatttcccatcgaagtgcgccagcttagc
cgctttgtcagcaccaaggacgccaatctgacccgagacggcatgacgaagggcaccgtt
gatatcgtcatcggcacccatgcgctgctggccaaaggcattcggtttaaagagcttggt
ctgttggtcatcgacgaagaacagcattttggcgtgacccataaagaacgtctgaagtcg
atgcgcacggatatccatgtgctgaccctgacggcgacgccaatcccgcgcaccttgcaa
ctaagccttaccggtgtgcgcgacctaagcatcatcggcacaccgcccgtcgaccggttg
gccatccgcacttatgtgtccgaattcgacgcggtgactttgcgcgaagcgttgttgcgc
gaacattatcgcggcggacagtcgttctatgtggtgccgcggatcagtgatctgcctgag
attgaggcattcctcaaagaacaactgccagagttgagctacgtgattgcccatggccag
atggccgcaggcgaacttgatgaccgaatgaacgctttttatgacggtaaattcgacatc
ctgctggccacaacgattgttgaatcgggcctcgatattccgacggccaacacgatggtt
gtgcaccgggcggatatgttcggcctggcgcagctttatcaaatccgaggccgtgttggc
cgctccaaaacccgtgcctatgcgtatctaacaaccaaaccgcgcgccaagctcacgccg
ttggctgagaagcgcctgagggttctgggcagtcttgatacgcttggagcaggctttacg
ctcgcctcacaggatctcgatattcgcggggcagggaacctgctgggtgaagagcaatca
ggtcagatgcgcgatgttggatttgagctttatcaatcgatgctcgaagaggcgatcgcc
aagatcaggtccggagagctggaaggccttgccggcgatgacggacaatgggcaccgcag
atcaacctaggcgtgcccgttctaattccggaaatctacgtaccggatctagatgtgcgg
ttaggcctgtatcgccgcctgtctgagttgaccacgaaggtggagctcgaaggttttgcc
gctgaattgatcgaccgttttggcaaattgccgcgcgaggtcaacacgttgatgttggtc
gttcggatcaaagcgatgtgtaaacgtgcaggcattgccaagttggatggcggcccaagg
ggcgcaactatccaattccacaacgacaaattcgcgtcacctgaaggtctggtcacgttc
cttcaggaccagcgcgggttggccaaggttaaagacaacaagatcgttgtgcgtcgcgac
tggaagtcagacgcagacaagatcaagggtggctttgcgattgcgcgcgatctggctgaa
catgtgatcgccaaggaaaaagccaacaaggcgcgcaaggtaacctaa
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