Sceloporus undulatus (fence lizard): 121916616
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Entry
121916616 CDS
T07740
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03013
Nucleocytoplasmic transport
sund03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121916616 (UPF1)
03015 mRNA surveillance pathway
121916616 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121916616 (UPF1)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121916616 (UPF1)
5.6.2.5 RNA 5'-3' helicase
121916616 (UPF1)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121916616 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
121916616 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_12
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
ATPase
SRP54
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
121916616
NCBI-ProteinID:
XP_042297842
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All DBs
Position
10:complement(16130321..16153051)
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AA seq
800 aa
AA seq
DB search
MAVINCWKAKGTRQATPLNHLLNYYKEQKRFYVEKRTAKHLRESLMPVQQHLEAWSIPIT
RGQQEEDRPELAAFILFLGGNYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRA
KCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDIN
WDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKP
GVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIA
YFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPV
EVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKVCAKPDQIGITSLRMRGTFLPGAVHAFSGSYTPSFTRSGIA
SVDAFQGREKDSSSVLRQGQ
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcattaattgttggaaagccaaaggcactcgccaagcaacccctttgaatcat
ctgctgaactactacaaggaacagaaaaggttctatgtggaaaaaaggaccgctaaacac
ctccgcgagagcctcatgccagttcagcagcacctcgaagcgtggtcaataccaatcacc
cggggacagcaagaggaggacaggcctgaattggcagccttcatcttgtttctgggcggg
aactactgtggcatccatgatccagcttgtgtggtctactgtaacaccagcaaaaagtgg
ttctgcaatgggcgtgggaatacatctggcagccacatcgtgaaccatcttgtgagagcc
aagtgcaaggaagtgactcttcacaaggatggccctctgggagagactgttttggagtgt
tacaactgtggctgtcgtaatgtgttcctgcttggcttcatcccagccaaggctgattct
gtcgttgtcttgctgtgcagacagccttgtgctagtcagagcagcttaaaggatatcaac
tgggacagctcacagtggcagcctttgatccaagaccgctgcttcctttcctggctggtc
aagattccttctgagcaagagcagctgagagcacggcagatcacagcccagcaaatcaac
aagctggaagaactgtggaaggagaatccatctgccacccttgaagacttggagaagcca
ggtgttgatgaagagccacagcatgtcttactcagatacgaggatgcctatcagtaccag
aacatctttgggcctctggtcaaacttgaggcagactatgacaagaagttgaaggagtct
cagacccaagacaacatcactgtgagatgggatttgggcttgaacaaaaagaggattgcc
tacttcaccttgccaaagactgattcagatatgcgcctgatgcagggagatgagatctgc
ctgagatacaaaggagatttggctccgctgtggaaaggaattggccacgtcattaaagtt
cctgataattatggagatgaaattgcaattgagctacggagtagcgttggggcccctgtg
gaagtgacccacaacttccaagtggactttgtgtggaagtcaacttccttcgacagaatg
cagagtgccctcaaaacatttgcagtggatgaaacctctgtgtctggctacatctatcac
aagcttctgggtcatgaggtggaagatgtcattatcaaatgtcaattgccaaagcgcttc
acggcacaagggctacctgacctcaaccattctcaggtgtatgctgtgaaaacagtcttg
cagcgtcccttgagccttatccagggcccccctgggactggtaagactgtaacatcagcc
accattgtgtatcacctggcgagacaaggaaatgggcctgtactagtctgtgccccaagt
aacatcgctgtggatcagttgacagagaagatacaccaaactggactgaaagtggtccgc
ctttgtgcaaaaagccgcgaggccattgactctccagtctctttcctggcgctgcacaat
cagatcaggaacatggacagtatgcctgaactccagaagctacagcagctgaaggatgag
actggggaactgtcatctgcggatgagaagcgctaccgggcactgaaacggacagccgag
cgggaattgctaatgaatgcagatgtcatttgctgcacatgtgtgggagctggggatcca
aggcttgcgaagatgcagttccgctccattttgatcgatgaaagcacccaggccactgag
ccggaatgcatggttccagttgtccttggagcaaagcagctgatccttgtgggagaccat
tgccagcttggccctgttgtgatgtgcaagaaggcagcaaaagcaggcctgtctcagtct
ctctttgagcggcttgtagtgctgggcatcagacccatccgtttgcaagtgcagtaccgc
atgcacccagccctgagtgcttttccttccaacatcttctatgagggatctcttcagaat
ggtgtcactgcagcggaccgtgtgaagaagggatttgacttccagtggcctcaaccagac
aagcctatgttcttctatgtgacccaagggcaagaggaaattgcaagttctgggacttca
tacctgaacagaacggaagctgcaaatgtagagaagataaccaccaagctgctaaaagtg
tgcgcaaaaccagatcagattgggatcacatcactccgtatgaggggcacgttcctacct
ggtgcagtacatgcgttcagtggctcctacacaccaagctttaccagaagtggaattgcc
agcgtagatgcattccaaggccgagagaaggattcatcatctgtcctgcgtcagggccaa
tga
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