Sceloporus undulatus (fence lizard): 121917337
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Entry
121917337 CDS
T07740
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03013
Nucleocytoplasmic transport
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121917337
09122 Translation
03013 Nucleocytoplasmic transport
121917337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121917337
03041 Spliceosome [BR:
sund03041
]
121917337
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121917337
Spliceosome [BR:
sund03041
]
Complex C
Other components
EJC/TREX
121917337
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121917337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
CTD7
Motif
Other DBs
NCBI-GeneID:
121917337
NCBI-ProteinID:
XP_042299168
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MSPPPLFSLPEARLRFMNSTREALKGKNIKPLLSAFAQIPGSENEKKFTLDQAFRVAVEE
EIINKAPCENVLAIISLVINGVTEGICTASTPFVLLGDVLDCLPLDQCDRIFTFVEKNVT
TWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSANWPPSQR
ANNFIAATALLVTGLNLQSQFNLENITVFNTSEQESTLGQKHVEEREEGMEVEEGEMGDD
EASTSCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQ
ASRKKLEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKS
SNYILTDEQSLWIEDTTKLVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFV
KERPSDSKPIKPFVRKRPAPEDFLGKGPNKKILMGNEELTRLWNLCPDNLEACKSESREY
MPTLEEFFEGAIEQADPENMVDKEFKVVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLP
EYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENNESPDVQRDKLVTGEQIELFA
NKLGEYWEILAPNLEMKESDIRQIESDSEDVKMRAKQLLVTWQDQEGIHATMENLITAVT
KAGLNDLADSLTNDNENNS
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgccgccgctcttcagtttgcccgaggctcggctgcgcttcatgaattctact
cgagaggccctcaagggcaaaaacattaaacctttactgagtgcattcgctcagatacct
ggaagtgaaaatgaaaaaaagtttaccctggatcaagctttcagagttgctgtagaagaa
gaaattataaataaagctccatgtgaaaatgtcttggctatcatctctcttgttattaat
ggggtcacagaaggtatctgtacagcatcaactccttttgtactccttggagatgttctg
gattgccttcctttggatcaatgtgacagaatttttacattcgtggaaaaaaatgtaact
acatggaaatcaaacacgttttactcagcaggaaagaattatttgctgagaatgtgcaat
gaccttttaagaagattgtctaaatcgcaaaatacagtattttgtggaagaatccaacta
ttcttagctagattatttccactatcagaaaaatcagctaactggcctccctcacagaga
gcaaataacttcattgctgcaacagctctactggttacaggacttaacttgcaaagtcaa
tttaatttggaaaatatcactgtttttaataccagcgagcaagagagcacccttggacaa
aagcatgtagaggaaagagaagaaggaatggaagtagaggaaggggaaatgggagatgat
gaagcctctactagttgttccattccaatagattacaatctgtacagaaaattctggtca
cttcaagactattttaggaatcctgtacaatgttatgaaaagatttcatggaaaacattt
cttaagtactcagaagaggtgctagctgtctttaaaagctacaagttggatgacacccag
gcttcaagaaagaaattagaagagctaaaaactggaggagagcatgtttattttgctaaa
ttcctcacaagtgaaaagctaatggatttacagctgagtgacagcaacttccgccgccac
atcctattgcaatatttaatattatttcagtacctcaaggggcaagtgaagtttaaaagt
tcaaactacattctgacagatgagcaatcactgtggattgaagatactaccaaattagtt
taccagctactttcagaaaaccccccagatggagagagattctcaaaaatggtggagcac
atattaaacacagaagaaaactggaattcatggaagaatgaaggttgtccaagttttgtg
aaagaaagaccaagtgattccaagccaataaaaccttttgtgcgtaagagacctgctcct
gaagacttcctggggaaaggacccaacaaaaaaattctcatggggaatgaagaattgact
cggctctggaatttatgccccgataacttggaagcctgtaaatctgagagccgagaatat
atgccaacgctggaagaattctttgaaggggctattgaacaggcagatcctgaaaatatg
gttgataaagaatttaaagttgtgaataattctaactatggctggagagcattaaggctg
ttggcacgcagaagtcctcacttcttccagcccaccaaccagcagtttaaaagtttacca
gaatatcttgaaaacatggtcatcaaattagctaaagaactaccccctccttctgaagaa
attaaaacaggcgaagatgaagatgaggaagataatgatgctttgttaaaggaaaacaat
gaaagcccggatgttcaacgggacaaacttgtaacaggagaacagatagagctgtttgca
aacaagcttggagaatactgggagattctggctccaaacttggaaatgaaagagtctgat
ataaggcagattgaatcagatagcgaagatgtgaagatgagagctaagcagctgcttgtt
acttggcaagatcaagaagggatccatgctacaatggaaaatctgattactgcagtgacc
aaagcaggattaaatgaccttgctgacagcctaacaaatgacaatgaaaacaatagctaa
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