Sceloporus undulatus (fence lizard): 121935745
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Entry
121935745 CDS
T07740
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03030
DNA replication
sund03410
Base excision repair
sund03420
Nucleotide excision repair
sund03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121935745 (LIG1)
03410 Base excision repair
121935745 (LIG1)
03420 Nucleotide excision repair
121935745 (LIG1)
03430 Mismatch repair
121935745 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sund03032
]
121935745 (LIG1)
03400 DNA repair and recombination proteins [BR:
sund03400
]
121935745 (LIG1)
Enzymes [BR:
sund01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121935745 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
121935745 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121935745 (LIG1)
DNA replication proteins [BR:
sund03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121935745 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121935745 (LIG1)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121935745 (LIG1)
NER (nucleotide excision repair)
Other NER factors
121935745 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
121935745 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
121935745
NCBI-ProteinID:
XP_042333513
LinkDB
All DBs
Position
6:101493656..101514299
Genome browser
AA seq
914 aa
AA seq
DB search
MQSTIRSFFQPVARANPGKEIEENNHLEEEPTPKKKSVNSEQTVNGTALCADFSRNPAAK
KGEDEENSRKTEEKDTQADESKLESVCVPEQNNPAESISPSTSPAPSNSLSPSSIPRRKT
ARKQVPKRKAQEEVNSYNNSEEALSAKRQKGDDDGDGPNGELDERPMEVEEEKVKDESSK
QIKHEAETEAEEEKMLTSKPSNKPISSFFAPRKASVKADKNQPPGLEENVPPAKSHSEVS
NHELNSLAGDSLKPSLTLEPSEYNPAKNNYHPVHDACWGPGQRVPYLAVARTFEWIEQES
ARLKIIETLSNLFRSVIALSPEDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATG
RQLDQIKAEAAEKGDLGLVAESSRTTQGTMFAPPKLGAAAVFGKLQAIGRMMGSSSMNKK
IDIIKSLFVACRHSEARYIARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPEVLDA
AKGKSAETRKAWLDERALIVKQAFCELPNYDTIVPVLLEHGVESLPQHCKITPGIPLKPM
LAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTKYPDIVS
RIPKVKKSSVQSCILDAEAVAWDPDSKQIQPFQVLTTRKRKDVDAEDIRVQVCVYAFDML
YLNGQSLVREPLSQRRALLRDSFTEVEGQFLFATSMDTSNTDEIAEFLERSIKDSCEGLM
VKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGGFLLACY
DEESEEFQSICKIGTGFTDEDLEKLHTSLKDHVIPQPRPYYRWGGTADPDHWLESQHVWE
VKCADLSISPVHRAATGLVDEEKGISLRFPRFLRIREDKKPEEATTSAQVAEMYRKQQQI
QNQQSVEKGDDDFY
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcacgataagatcattcttccagccagtagcccgagcaaatcctggaaaagag
atagaagaaaataaccatctagaagaagagcccacccccaaaaagaaatcagtaaattct
gaacagacagtaaatggtacagcactgtgtgcagatttctcaaggaatccagcagccaaa
aaaggtgaagatgaagaaaattctaggaaaacagaagaaaaggatacacaagctgatgaa
agcaaactggaatctgtctgtgttcctgaacagaataatcctgcagagagcatctcccca
agcactagcccagctccctctaattcactctcaccttctagcattccacgacgcaaaact
gcccgcaagcaggtccctaaacgtaaagcacaggaagaagtcaacagttataataattct
gaggaagctcttagtgccaaaaggcagaaaggagatgatgatggagatggtccaaatgga
gagctggatgagagacccatggaagtggaagaagagaaagtcaaagatgagagttcaaaa
cagataaagcatgaagcagagacagaagcagaggaagagaaaatgctgacatccaagcca
tccaacaagcccatctctagcttttttgcccccaggaaagcctctgtgaaagcagacaaa
aatcagccacctgggttggaagaaaatgtgcctccagcaaagagtcacagcgaagtcagt
aaccacgaattaaatagcttggctggagattctctgaagccttcactcacacttgagcct
tcagagtacaacccagcaaagaacaactatcatcctgtccacgatgcttgttggggtcct
ggtcagagggtaccatacttggctgtggctcgtacctttgagtggattgaacaagagtct
gcccggttgaaaattatagagacactgagcaatctgtttcgctctgtgattgccctgtct
ccagaagacctgctgccctgtgtctatctttgtctaaatcggctaggtccagcatacgag
gggctagaactgggaattggcaaaaccattctcatgaaagctttggctcaggccacaggt
cgacagctggatcagatcaaggcagaggcagctgagaaaggagatctaggattagttgct
gaaagcagccgcaccacacaaggcaccatgtttgccccaccgaagcttggtgctgctgca
gtctttggcaaactgcaagcaattgggcgcatgatggggagctcttccatgaacaagaaa
attgacattatcaagtccttgtttgttgcctgtcgccattcagaggctcgttacattgct
cgatcactagaagggaagctgcggattgggttagcagaacaatctgttctgtcagctttg
gcccaggcagcatcactcactcctccaggacaaaaattccccccagaagttctggatgct
gcaaagggcaaatctgcagagacccgcaaagcctggctagatgagagagctttgattgtt
aagcaagccttctgtgagctgccaaattatgacaccattgtacctgtcctcttagagcat
ggcgtggagagcttgcctcagcactgcaaaatcacaccaggaatccccctgaagcccatg
ctggctcacccaaccaaaggaattggagaggtattaaagcgttttgaggaggcagctttt
acttgtgaatataagtatgatggggagcgagcacagatccacattctggagaacggagaa
gtacatatctacagccggaaccaagagaacaacacaaccaaatatcctgacattgtcagc
cgtatccccaaggttaaaaagagttctgtacagtcatgcatcttggatgctgaggctgtg
gcctgggatcctgattctaaacagatccagccattccaggtgttgactacccggaagcgt
aaggatgtggatgctgaagatatccgagtgcaggtttgcgtgtatgcatttgacatgctc
tacctcaatgggcagtctttggtccgggaacccctatcccagcgccgagccctactgcgt
gattccttcactgaggttgaaggtcagttcctctttgcaacctccatggatactagtaat
acagatgagattgctgaattcctggaacgctccatcaaagactcttgtgaggggctaatg
gtgaaaacactagaagtggatgccacatatgaaattgcaaagagatcccacaactggttg
aagctgaaaaaagattatctggaaggtgtgggggacactctggacctggttgtgattggt
gcctacttgggcaagggcaaacgtgcaggcacatatggcggtttccttctggcttgttac
gatgaggaaagtgaagagttccagagcatctgcaagatcggcactggttttacagatgag
gacctcgagaaactccatacctctctcaaggaccatgtgattccacagccacggccatac
taccgctggggtgggacagcagatcctgaccactggctggagtcccagcatgtctgggaa
gtgaaatgtgcagacctatccatttctcctgtccacagagcagcaactggattggtggat
gaagaaaagggcatctctctacgcttccccagattcctacgcatccgagaggataagaaa
ccagaggaagctactaccagtgctcaggtggctgagatgtacaggaaacagcaacagatc
cagaatcagcagtcagtggaaaaaggagatgatgacttttactaa
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