Sceloporus undulatus (fence lizard): 121936318
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Entry
121936318 CDS
T07740
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04120
Ubiquitin mediated proteolysis
sund04137
Mitophagy - animal
sund04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121936318 (PRKN)
04120 Ubiquitin mediated proteolysis
121936318 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121936318 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sund04131
]
121936318 (PRKN)
04121 Ubiquitin system [BR:
sund04121
]
121936318 (PRKN)
03029 Mitochondrial biogenesis [BR:
sund03029
]
121936318 (PRKN)
Enzymes [BR:
sund01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121936318 (PRKN)
Membrane trafficking [BR:
sund04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121936318 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
121936318 (PRKN)
Xenophagy
Other xenophagy associated proteins
121936318 (PRKN)
Ubiquitin system [BR:
sund04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121936318 (PRKN)
Mitochondrial biogenesis [BR:
sund03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121936318 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Crinkler
PilN_bio_d
Motif
Other DBs
NCBI-GeneID:
121936318
NCBI-ProteinID:
XP_042334392
LinkDB
All DBs
Position
1:78261112..78939656
Genome browser
AA seq
374 aa
AA seq
DB search
MDSLQHIVLYCPFYQVFVRFNSSHGFPVEIDADTSIFQLKEAVAKRQGVPADQLRVIFAG
KELRNDLTLQSCDLPQQSIVHVVQTPQKSNQGGIETGSENVCGVLTSDGREAKSLTRVDL
NTNLLPSNSAGLAVILDTGGKSISSPPDNSGNSSYNSFYVFCKSFCQAVKPGKLRVRCRT
CKQGTLTLSRGPSCWDDVLTPNRITGICQSQNCSGEIAEFYFKCGAHPTSDSETSVALNL
ITTNSRGISCITCTDVRSPVLVFPCIHRHVICLDCFHLYCVTMLNIRQFVHNPVFGYSLP
CVAGCPDSLIKELHHFRILGEEQYNRYQCYGAEEYVLQMGGVLCPTPGCGAGLLPEPEER
RIVCEPSNGMGCGL
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggactcactccagcatattgtgctctactgccctttctaccaagtgtttgtcaggttc
aactccagccatggtttcccagtggagattgatgcagacaccagcatcttccagctcaag
gaggcagttgctaagcgacagggagttccagctgaccagttgcgagtgatttttgcaggg
aaggagctcaggaatgacttgacactgcagagctgcgacttaccccaacaaagtattgtt
catgttgttcagactccgcagaaaagcaatcaaggagggattgagactggaagtgaaaat
gtttgtggtgttctaacaagtgatggaagagaagccaaaagcctcactcgtgtggatctc
aataccaaccttctcccttctaactcagctggacttgctgtgattttggacacaggagga
aagagcatctcttctccacctgacaattcagggaattcttcatacaacagtttttatgtt
ttctgtaaaagtttctgccaagcagtgaaacctgggaagcttcgtgttcgttgcagaaca
tgcaaacaaggcacactgactctgtccaggggtccttcttgctgggatgacgttctgact
ccaaacagaataactggtatttgccaatcccaaaactgcagtggagaaatagcggaattc
tactttaaatgtggagcacacccaacctctgacagtgagacatctgtggcactgaacctc
attaccacaaatagtcggggcatctcatgtataacctgtacagatgttcggagtcctgtg
ttggtattcccatgcattcatcgccatgtcatttgcctagactgttttcatctgtactgt
gtgactatgctgaacattcgccaatttgtccataaccctgtttttggctactcccttcca
tgtgtggctggctgtccagattccttgattaaagagctgcatcacttcagaattctgggc
gaggagcagtacaaccgttaccagtgttatggtgctgaggaatatgttctgcagatgggt
ggtgtcctgtgtcccacgccaggatgtggtgcagggctgcttcctgaacctgaagagaga
aggattgtgtgtgagccaagcaatggaatgggttgtgggctgtga
DBGET
integrated database retrieval system
