Stigmatella aurantiaca: STAUR_3146
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Entry
STAUR_3146 CDS
T01425
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sur
Stigmatella aurantiaca
Pathway
sur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STAUR_3146 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sur03021
]
STAUR_3146 (rho)
03019 Messenger RNA biogenesis [BR:
sur03019
]
STAUR_3146 (rho)
Transcription machinery [BR:
sur03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
STAUR_3146 (rho)
Messenger RNA biogenesis [BR:
sur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STAUR_3146 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_22
NACHT
Spore_III_AA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADO70938
UniProt:
E3FVB2
LinkDB
All DBs
Position
complement(3786997..3788763)
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AA seq
588 aa
AA seq
DB search
MWAPPSGWPSGRWRVPGPAVLAGERLRTGAGAPSTAPRQASCPTCMSNRASPALRPCRAD
SLRNSMSETPDSNDPRNPLRPTEAARPEPSAPDDEGGDDGEGDEGPDEGDASAASAGQAG
PGGPPGQAGGRRRRRRRRRRGAQVLFTPEGQAYRMQPGPDGQMVQVFLTPQELQQHQQRL
AQQQQQQPPAPQHGQHGQHPPHAPHSPRAPHHGGPQGHAAPQQHLAPVEGVLDTEAKGPN
AFLRQLKKNLLPSPDDAELPKNLVQKLRLRQGQYVTAFAQMRGTKGLIQRVDTVDGRPLD
GAPRLPHFADLTSVDPIERIKLENGHREMVTRVMDLIAPIGKGQRALIVAPPKTGKTIML
QRIAQAVLSNHPEIHVMVLLIDERPEEVTDMRRSIKAEVLASSSDRPTGDHLKVAELALE
RARRLVESGKDVLVLLDSITRLARAYNKEVDSSGRTLTGGVDSRALERPKRIFGAARATE
EAGTLTIIGTALIDTGSRMDEVIFEEFKGTGNSEVTLDRLLAEKRVFPAINIAQSGTRKE
EKLFTLKEYEKIRKLRQMLFAVKPVEAMEALIKRLSRYTYNDEFFDEL
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtgggcaccgccctcgggctggccttcgggccgctggagggttccaggaccggcggtt
ttggccggcgagcgccttcgcacaggagcgggggccccctcgacggccccgcgtcaggca
tcctgtcccacatgtatgtcgaaccgcgcgtccccggccctcaggccgtgccgtgcggac
agcctccggaattccatgagcgagacccctgacagcaacgatccccgcaatcccctccgg
cccaccgaggccgcccgccccgagccgtctgccccggacgacgagggcggtgatgacggt
gagggggacgaggggcccgacgagggcgatgcctccgcagcctccgcgggccaggccggc
cccggggggcctccgggccaagccgggggccgccgccgccgccgccgccgccgccgccgg
ggtgcccaggtcctcttcacgccggagggccaggcctaccgcatgcagccagggccggat
ggccagatggtgcaggtgttcctcaccccgcaggagctccagcagcaccagcagcgcctg
gcccagcagcagcagcagcaaccgccggccccgcagcatggccagcacggccagcacccc
ccgcacgcgccccacagcccgcgggccccgcaccacggcggcccccagggccacgccgcg
ccccagcagcacctggcccccgtggagggcgtgctggacaccgaggccaaggggcccaac
gccttcctgcgtcagctgaagaagaacctgctgccctcgccggatgacgcggagctgccc
aagaacctggtgcagaagctgcgcctgcggcagggccagtacgtcaccgcgttcgcgcag
atgcggggcaccaagggcctcatccagcgcgtggacaccgtggacggccgcccgctggac
ggggcgccccggctgccgcacttcgcggacctcacctcggtggaccccatcgagcgcatc
aagctggagaacggccaccgggagatggtcacccgggtgatggacctgattgcccccatc
ggcaaggggcagcgcgcgctcatcgtcgccccgcccaagacgggcaagacgatcatgctc
cagcgcattgcccaggcggtgctctccaaccatccggaaatccacgtgatggtgctgctc
atcgacgagcgccccgaggaagtcaccgacatgcgccgcagcatcaaggcggaggtgctc
gcctcgagctcggaccggcccacgggcgaccacctcaaggtggcggagctggcgctggag
cgggcgcggcgcctggtggagagcggcaaggacgtgctcgtcctcctggactccatcacc
cggctggcgcgcgcctacaacaaggaagtggacagctcgggccgcaccctcacgggcggc
gtggacagccgcgccctggagcgccccaagcgcatcttcggtgccgcgcgtgccaccgag
gaggcgggcacgctcaccatcatcggcacggcgctcatcgacaccggcagccgcatggac
gaggtcatcttcgaggagttcaagggcaccgggaactccgaggtgacgctggaccggttg
ctggccgagaagcgcgtcttccccgccatcaacatcgcccagtccggcacgcgcaaggag
gagaagctcttcaccctcaaggagtacgagaagatccgcaagctgcggcagatgctcttc
gcggtgaagccggtggaggccatggaggcgctcatcaagcgcctgagccgctacacctac
aacgacgagttcttcgacgagttgtag
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