Serratia ureilytica: J0X03_13870
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Entry
J0X03_13870 CDS
T07185
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
suri
Serratia ureilytica
Pathway
suri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J0X03_13870 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suri03400
]
J0X03_13870 (mfd)
Enzymes [BR:
suri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0X03_13870 (mfd)
DNA repair and recombination proteins [BR:
suri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J0X03_13870 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSR05548
LinkDB
All DBs
Position
2968439..2971912
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTSDSRNRSSSPRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHPGPVMLIAPDMQNA
LRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISDRLSSLYHLPTMARGVIILPVNT
LMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLY
PMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWR
EQFEVRRDAEHIYQQVSKSAWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGDLEGAA
ERFWQDVNQRYESRRVDPMRPLLAPDTLWLRVDALFGELKAWPRIALKTDELPAKAGNTN
LDYHALPDLAVQAQHKSPLDNLRRFIESFDGSVIFSVESEGRRETLQDLLGRIKLAPALI
QRLDQAETAGRYMMVGAAEHGFLDGLRRRALICESDLLGERVSRRRQDNRRTINTDTLIR
NLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISRY
AGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKAGFAFKHNREQYQL
FCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQV
AVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAAEGKVDIIIGTHK
LLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAEL
VPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFG
LAQLHQLRGRVGRSHHQAYAYLLTPNPKAMGTDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSSQTEVELRMPALL
PEDFIPDVNTRLSLYKRIASAKNDGELDELKVELIDRFGQLPDAARNLLQCAALRLHAQK
LGIKRIESNERGGFIEFGDNNRVDPGYLIGLLQGNPQVYRLDGPSKLKFTLDLADRQKRL
TFTEELLDAFREHTLAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgatagccgtaaccgttcttcatcccctcgttattctctgcccgatcgc
gcgggcgatctgcgccaactggggcaactgaccggcgcggcctgtgccgtggagtgcgcc
gagatcgtcgaacgccatcctggcccagtgatgctgatcgcgccggacatgcaaaacgcc
ctgcggctgcgcgacgagatccagcagttcaccgatcagatggtgaccaccctgtccgac
tgggaaaccctgccgtacgacagcttctcgccgcaccaggaaatcatctccgaccgtttg
tcgagcctgtatcacctgccgaccatggcgcgcggcgtgatcattctgccggtcaatacc
ctgatgcaacgcgtctgcccgcacgaattcctgcacggccatgcgctggtgatgaaaaaa
ggccagcgcctgtcgcgcgacaaactgcgcgcgcagctggaacaggccggctaccgcagc
gtcgatcaggtgatggagcacggcgaattcgccacccgcggcgcgctgctcgacctgtat
ccaatgggcagcgatgagccttaccgcatcgacttcttcgatgacgagatagacagcctg
cgcatcttcgacgtcgacacccagcgcacgctgagcgaagtcgaggccatcaatctgttg
ccggcccacgagttccctaccgacaaaaacgccatcgagctgttccgcagccagtggcgc
gagcagtttgaggtgcgtcgcgacgccgagcacatctatcagcaggtcagcaaaagcgcc
tggcccgccggcatcgaatactggcagccgctgttcttcagccagccgctgccgtcgctg
ttcagctacctgccggccaatacgctgatcgtcaacaccggcgatctggagggcgccgcc
gagcgcttttggcaggacgtcaaccagcgttacgaaagccgccgcgtcgatccgatgcgc
ccgctgctggcgccggatacgctgtggctgcgcgttgacgcgctgttcggcgagctgaaa
gcctggccgcgcatcgcgctgaaaaccgatgagctgccggccaaagccggcaataccaat
ctggattaccatgccctgcccgatctggcggtgcaggcgcagcataaatccccgctggat
aatctgcgccgctttattgaaagttttgacggcagcgttatcttctccgtcgagagcgag
gggcggcgtgaaacgctgcaggatctgctcggccgcatcaagctggcgcctgccttgatc
caacgactcgatcaggcggaaaccgcgggccgttacatgatggtcggcgccgccgaacac
ggcttcctcgacggcctgcgtcggcgggcgctgatctgcgaaagcgatctgctcggcgag
cgtgtcagccgtcgccggcaggacaaccggcgcaccatcaacaccgataccctgatccgc
aacctggcggagctgcatcccggccagccggtggtgcacttggagcacggtgtgggccgc
tatgtcggcctgaccacgctggaggccggcggcatcaaggccgaatacctgatcctctcc
tacgccggtgaagacaaactgtacgtgccggtgtcatcgctgcacctgatcagccgctac
gccggcggcgcggacgaaaacgctccgctgcacaaactgggcggcgacgcttggacccgc
gcgcggcagaaagccgccgagcgggtgcgcgacgtggcggccgagctgctggatatttac
gcccagcgcgccgccaaggccggtttcgccttcaaacacaaccgcgagcagtaccagctg
ttctgccagagcttcccgttcgaaaccacgccggatcaggaacaggcgatcaacgcggtg
ctgagcgacatgtgccagccgctggcgatggatcgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagtggcgatgcgcgccgccttcctggcggtggaaaacggcaagcaggtg
gcggtgctggtgccgacgacgctgctggcgcagcagcacttcgacaacttccgcgatcgc
ttcgccacctggccgatccgcatcgagatgatgtcgcgcttccgcagcgccaaagagcag
caacaggtgctggacgacgcggccgaaggcaaagtggacatcatcatcggcacccacaaa
ctgctgcagagcgatctgcgctggaaggatttggggctgctgatcgtcgatgaagagcac
cgctttggcgtgcgccacaaggagcgcatcaaggcgatgcgcgccgacgtcgatatcctg
acgctgaccgccacgccgatcccgcggacgttgaacatggcgatgagcggcatgcgcgat
ctgtctatcattgccaccccaccggcgcgccggctggcggtgaagaccttcgtgcgcgaa
tacgacagcctggtggtgcgcgaggcgatcctgcgcgaagtgctgcgcggcggccaggtt
tactacctttacaacgacgtggaaaacatcgagaaagcggcgcagcgtctggctgagctg
gtgccggaagcgcgcatcgccatcggccacggccagatgcgcgaacgcgatctggaacgg
gtgatgaacgatttccaccaccagcgcttcaacgtgctggtgtgcaccaccatcatcgaa
accggcatcgatatccccagcgccaacactatcatcatcgagcgcgccgatcgcttcggc
ctggcgcagctgcaccagctgcgcggccgcgtcgggcgttcgcaccatcaggcttacgcc
tatctgctgacgccaaaccccaaagccatgggcaccgacgcccataaacggctcgaggcc
atcgcgtcgctggaagatctcggcgccgggttcgcgctggcgactcacgatctggagatc
cgcggcgccggtgagctgctgggtgaagaccagagcggccagatgaccaccgtcggtttc
tcgctctatatggaactgctggaaagcgccgtcgacgcgttgaaaaacggtcgcgagccg
tcgttggaagatctcaccagcagccaaaccgaggtggagctacgcatgccggccctgctg
ccggaagacttcattcccgacgtcaatacccgcctgtcactgtataagcgcatcgccagc
gcgaagaacgacggtgagcttgacgagttgaaggtcgagctgatcgaccgcttcggccag
ctgccggatgcggcgcgcaacctgttgcaatgcgcggcgctgcgcctgcatgcgcagaag
ctggggatcaaacgcatcgagagcaacgagcgcggcggctttatcgagttcggcgacaac
aaccgcgtcgacccgggttatctgatcggcctgttgcagggcaatccgcaggtttaccgc
ctggacggcccgagcaagctgaagttcacgctcgatctggccgatcgccagaaacgcctg
acgttcaccgaagagctgctggacgccttccgcgaacacacgctggcggcctga
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