Serratia ureilytica: J0X03_22610
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Entry
J0X03_22610 CDS
T07185
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
suri
Serratia ureilytica
Pathway
suri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
suri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J0X03_22610 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suri03021
]
J0X03_22610 (rpoC)
03400 DNA repair and recombination proteins [BR:
suri03400
]
J0X03_22610 (rpoC)
Enzymes [BR:
suri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J0X03_22610 (rpoC)
Transcription machinery [BR:
suri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J0X03_22610 (rpoC)
DNA repair and recombination proteins [BR:
suri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J0X03_22610 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QSR07151
LinkDB
All DBs
Position
complement(4774495..4778718)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGSKEAERVYRAG
LASLHARVKVRITEDVKNAEGEWTSQTSIIDTTIGRAILWMIVPKGLPYAIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKACDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGEDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEAEGKIPATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcctcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagagcgtgacggccttttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcttccccgactgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtggtcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagccattcaggccctgttgaaaaacatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgcaagaagctgaccaagcgt
atcaagctactggaagcgttcgtacagtccggtaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgcccgctggttccgctggatggcggtcgtttc
gcgacgtcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgccctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaaacgcgttgactactcaggccgttccgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaagatggcgttggagctgttcaaaccgttc
atctacggcaaattggagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtttgggatatcctggacgaagtgattcgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtccccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggtgctgaacggttccaaagaagctgagcgtgtttaccgcgccggc
ctggcgtcgctgcatgcgcgcgttaaagtgcgtatcaccgaagacgtcaagaacgccgaa
ggcgagtggacctctcagaccagcatcatcgacaccaccatcggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtacgcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggctttgcttacgcagcccgttccggcgcttccgtaggt
atcgacgacatggttatcccggccaagaaggcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggtgaccgccggcgaacgctacaac
aaagtgatcgatatctgggctgccgcgaacgaacgcgttgcgaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggacctggtggtgaccgaagacgactgtggcacccacgacggcatc
ctgatgactccggttatcgaaggtggcgatgtgaaagagccgctgcgtgaacgcgttctg
ggccgtgtgacggcagaagacgtcctcaagccgggtacggcggacattctggtgccgcgc
aacaccctgctgaacgagaaggcgtgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtggtgagctgtgaaaccgacttcggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcattcaggtgaaaaacaagggtagcatcaagctg
agcaacgcgaagttcgttatgaacgccgcaggcaagctggtgatcacctcgcgtaacacc
gaactgaaactgatcgacgaattcggccgtaccaaagaaagctacaaggtgccttacggc
gccgtgatgggcaaaggcgacggtgaagaagttaacggcggcgaaaccgttgctaactgg
gatccgcataccatgccggtcatcagtgaagtcagcggcttcattcgcttcgccgacatg
gtcgacggccagacgattactcgtcagaccgacgaactgaccggtttgtcttctctggtt
gtcctggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgctaagggcgaagacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccgggcaaagcgatcgttcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatttctccgctg
gacggcagcgacgcttacgaagagatgattccgaaatggcgccagctcaacgtgttcgaa
ggcgaagtggtggaacgtggcgacgtcgtctccgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggcgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttagcgctggtggctccgagttcctggaaggcgagcaggct
gaagtgtctcgcgtcaagattgccaaccgtcagctggaagctgaaggtaagatcccggca
accttctcgcgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgccgcatcgttccaggaaacgacgcgcgttctgaccgaagctgccgtagccggcaag
cgcgacgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgcatgcgtcgtcgtgctcagggcgaagcgccggtt
gttccgcaagtcagcgcggaagaagcgaccgcgaacctggccgaactgctcaacgcaggt
ctgggcggcagcgacgacgagtaa
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integrated database retrieval system
