Sporosarcina ureilytica: BI350_14135
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Entry
BI350_14135 CDS
T08603
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
surl
Sporosarcina ureilytica
Brite
KEGG Orthology (KO) [BR:
surl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BI350_14135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
surl03400
]
BI350_14135
Enzymes [BR:
surl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BI350_14135
DNA repair and recombination proteins [BR:
surl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BI350_14135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AOV08561
UniProt:
A0A1D8JIM6
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Position
complement(2868377..2870212)
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AA seq
611 aa
AA seq
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MKPMLLTDANDIPKGKEWMYETKYDGFRCILTWEGETPTLKSRNDKELTHLFPEIIQFCS
DIYERIQPYLPLRLDGELVYLRNDFQSEFSIVQTRGRMRSETSISDHVQAFPCHYIGFDI
LKLKDEDLTNLSLTKRKKALQKIFNATELPTSVNYKSNKRLQMLETFTNDEHLWNKITVH
NGEGIIAKRKGSTWIEGTRTKQWLKIKNWRYVTVILTKYDESNGFFTGAVYKEGELTEIV
TFLHGLEDEEIETLRTLFRTNGKQISRNMWELAPSICIQIACISFDGKHLREPRFHKFDF
EMNAANCDWNQMLRQLLPIPESIAITHPDKPVWPQMEIRKEDYLYYLQNVASLMLPFLHN
RHLTVIRYPHGVPGEKFYQKNAPDYLPDFIATSRLEDIDYILCNEIESLLWLGNQLALEF
HIPFQTINTAKPTEIVFDLDPPSVEEFSIAVEAAIRMKAIFDKFELESFVKTSGGKGLQI
YIPLPFNRHTYEDTRLFTKFVCDFLCEQEPDWFTTERLKKNRNNKLYLDYVQHQAGKTIV
APYSPRGNEHCFIATPLQWEEVDSSLKPSQFTIPVILERIHHQNDPFRDFFDVGEKQEFE
SVYRQLKDLLG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatgttattaacggatgcaaatgatattcctaaaggaaaagaatggatgtat
gaaacgaagtacgatggatttcggtgtattttaacgtgggaaggagaaacacctactttg
aaaagccggaacgataaggaacttacgcatttatttccggaaattattcaattttgctca
gacatatatgagagaattcaaccttatttacctttacgattggacggcgaacttgtttat
ttacgaaatgattttcaaagcgaattttctatcgttcagacacgtggacgcatgcgcagt
gaaacgagcatctcagatcacgttcaagcatttccatgtcattatattggatttgatatt
ttgaaattaaaagatgaagatttaaccaatttatctttaacaaaaagaaagaaggcatta
caaaaaatatttaatgcaactgaacttccgacttcagtaaactataaaagcaacaagcgt
ctacaaatgctcgaaacttttaccaatgacgaacatttgtggaataaaatcactgtacat
aacggcgaaggcatcatagcaaaaaggaaaggcagtacatggattgaaggaacgcggaca
aaacaatggttgaaaattaaaaattggcgttacgttactgtgattttaacgaaatacgat
gaaagcaatggattttttacaggcgcagtatataaagaaggggaactaaccgaaattgta
acgtttcttcatggtttagaagatgaagagatagagacgttgcgaacattatttagaaca
aatggaaagcaaatatctcgaaatatgtgggaactcgcgccatcgatttgtattcaaatt
gcttgtattagttttgatggtaaacatttacgtgaaccaagatttcacaagtttgatttt
gaaatgaatgcagctaactgtgactggaatcaaatgcttcggcagttactccctatcccc
gaatcaatagcaattacacatcctgataagccagtttggcctcaaatggagattcgaaaa
gaagactacttgtattacttacaaaacgttgcatcgcttatgctgccatttttgcataat
cgacatcttaccgtcattcgttacccgcacggggtgccaggtgagaagttttatcaaaaa
aatgcacctgattatctaccggatttcatagctacctcacgattggaggatatcgactat
attttatgtaacgaaattgaatcattgttgtggcttggcaatcaactcgcccttgaattt
catatcccttttcaaacgataaatacggcaaagccgactgaaatagtttttgatttagat
ccgccttcagtcgaggagttttctatagctgtcgaggcggctatccgaatgaaagcaata
ttcgataaatttgaacttgaatcttttgtgaaaacgtccggtggaaaaggtttacaaatt
tatatacccttgccatttaatcggcatacttatgaagatactcgtttatttacaaagttt
gtttgtgactttttgtgtgaacaggaaccggattggtttacgacagagcgtcttaaaaag
aatcgtaacaataaattatatttagattatgttcaacatcaagcaggaaaaacaattgtg
gcaccttattcaccgagaggtaatgagcattgctttatcgcaactccattacaatgggag
gaagtcgattcatcattaaagcctagccaatttacgattcccgtcattttagagcgaatc
catcatcaaaatgatccatttcgtgacttttttgatgtaggagagaagcaagaatttgaa
agtgtttaccgccaactgaaagatttactaggttaa
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