Candidatus Solibacter usitatus: Acid_5456
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Entry
Acid_5456 CDS
T00412
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Acid_5456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sus03021
]
Acid_5456
03400 DNA repair and recombination proteins [BR:
sus03400
]
Acid_5456
Enzymes [BR:
sus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Acid_5456
Transcription machinery [BR:
sus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Acid_5456
DNA repair and recombination proteins [BR:
sus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Acid_5456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABJ86403
UniProt:
Q01VB2
LinkDB
All DBs
Position
complement(6833207..6837418)
Genome browser
AA seq
1403 aa
AA seq
DB search
MRSSPYDRANLIADFDSIRISLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARIF
GPTQDWECLCGKYKRMKHRGVICDKCGVEVTLARVRRERLGHIELASPCSHVWFFKGLPS
RIGHLLDITLRELERVLYFEAYVIVDPGDGTGLSSGEVITDERKRQLDQEFPGKFIAMMG
AEGIKELLKKIDVESLSEEIREKMKTEQSQQKKLKHAKRLRVVESFRKSGNKPEWMILDV
IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLIELHAPDVIVRNEKRMLQE
AVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDL
KLHQCGLPKKMALELFKPFIYHRLEQRGHCTTIKQAKELVEQQDPVVWDILEEVIKDHPI
MLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIEAS
TLMLSANNILSPAHGGPITIPTQDMVLGCYYLTKSRPGAKGEGRTFASTDDVLIALEMGE
VETLTPIKLRYTGKVIDLVHAFDTQNILHTEPIEFIKQYMDTTVGRVILNDNLPQDMPYI
NGLLKKKGLAQLVQYCYLKFGLHVTVHMLDEIKSLGFLYATRAGISIGIDDMVVPSEKAG
LVRDAEKEVVLVENQYQDGAITHGERYNKIIEIWSKVTERVSDEMFTAMEEDDRTGRYLN
PIYIMADSGARGSKQQIRQLSGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTADSGYLTRRLVDVAQDVIISENDCGTTEGIYVEPIIESGEIIEALRDRIV
GRVALEDQKDYEGNVIVGVNQEITEDLAAAIQAAGIERVKIRSVLTCESKRGVCVACYGR
NLATGRLVERGEAVGVIAAQSIGEPGTQLTMRTFHIGGTATRINEQSKQDAKSDGFARYI
GIQTVRSKVGELIAMNRNGIMAVVDDKGREKERYPAVYGARVLVEDGAPVKSNQVLLEWD
PYTFSILTEVSGVVHFKDLIDGLTMQERLDEVTGMSQLVVIDSPDEKRQPMIQVRPEGAT
GRGSEAKKYLMPTHAHLMVRDGEELHAGDVLAKIPRETTKTKDITGGLPRVVELFEARKP
RETAIIAEINGTVKYGEVTKGQRKIYVEGEDGEKREYALPRGVHINVQEGEKVKAGEPLM
DGPRDPHDILAVLGEKELQKYLVNEIQEVYRLQGVNINDKHLETISRQMMRWVKVEDIGD
TEFLPEEIVDKFKFRTENNKVLEAGGRPAQGKAMLLGITKASLSTDSFISAASFQETTRV
LTEAAINGKVDYLRGLKENVIMGRLVPAGTGMEYYRQVKIAGEDVVEEPVAEPLDIIPGY
DEETRLQYAGGLPEDTGEESLAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
ttgagatcctctccgtatgatcgtgcgaatttgatcgcggattttgattcgatccgcatt
tctctggcctctccggaaaaaatccggagctggtcgcatggggaagtcaccaagccggag
accatcaactaccggacctttaagccggagcgcgacggactcttctgcgcgcgtattttc
ggccccacccaggattgggagtgcttgtgcggcaagtataagcgcatgaagcaccgcggc
gttatttgcgacaagtgcggcgtggaagtcacgctggcgcgcgttcgccgtgagcgcctt
ggacatatcgaactggccagcccgtgctcgcacgtgtggttcttcaagggactgccgagc
cgcatcgggcacctgctggacatcacgctgcgcgaactggagcgcgtgctctatttcgaa
gcttacgtgatcgtggatccgggcgacggcaccgggctcagcagcggcgaagtaatcacg
gacgagcgcaagcggcagctcgaccaggaattcccgggcaagttcatcgcgatgatgggc
gccgagggaatcaaggaactgctcaagaagatcgacgtcgagtcgctcagcgaagagatt
cgcgagaagatgaagaccgagcagagccagcagaaaaaactgaagcacgccaagcgcttg
cgcgtggtggaaagcttccgcaagagcggcaacaagccggagtggatgattctggacgtc
atcccggtaattccgccggagttgcgcccgctggtgccgttggacggcggccgtttcgcg
acctccgatttgaatgatctctaccgccgcgtgatcaaccgcaacaaccggttgaagaag
ctgatcgagctgcacgcgccggacgtgatcgtgcgcaacgaaaagcgcatgctgcaggaa
gccgtggacgcgctgttcgacaacggacgccgtggacgcgtgctgcgcggcgccaacaac
cgcccgctgaaatcgctctccgacacgttgaagggcaagcagggccgtttccgccagaac
ctgctcggcaagcgcgtggattactcgggccgttccgtaatcgtcgtcggccccgacctg
aagctgcatcagtgcggtcttcccaagaagatggcgctggaactgttcaagccgttcatt
tatcaccggctcgagcagcgtggtcattgcaccaccatcaagcaagccaaggaactggtg
gagcagcaggatccggtggtttgggacattttggaagaggtgatcaaggaccatccgatc
atgctcaaccgcgctcccacgctgcaccgcctcggcatccaggccttcgagccggtgctg
gtggaaggcaaggcgatcaagatccacccgctggtctgcaccgcgttcaacgcggatttc
gacggcgaccagatggcggtacatattccgctgtcgcccgaagcgcagatcgaagcttcg
acgctgatgctttcggcgaataacattctgtcgccggcgcacggcggaccgatcacgatc
ccgacgcaggacatggtgctgggctgctactacctgaccaagtcgcggccgggcgcgaag
ggcgaagggcgaacgttcgcatccacggacgacgttttgatcgcgctcgaaatgggcgaa
gtcgagacgctgacgccgatcaaactgcgctacaccggcaaggtgatcgacttggtgcac
gccttcgacacgcagaacattcttcacacggaaccgatcgagttcatcaagcagtacatg
gatacgacggtgggccgcgtgattctcaacgacaacctgccgcaggacatgccgtacatc
aacggccttctgaagaagaagggcctggcgcagctggtgcagtattgctacctcaagttc
ggcctgcacgtaaccgtgcacatgctggacgagatcaagagcctgggcttcctgtacgct
acgcgggcgggcatttcgatcggcatcgacgacatggtcgtcccgagcgagaaggccggc
ctggtgcgcgacgccgagaaggaagtggtgctcgtggaaaaccagtatcaggacggcgcc
atcacgcacggcgaacgctataacaagatcatcgaaatctggagtaaggttaccgaacgg
gtctccgatgagatgttcacggcgatggaagaggacgaccgtacgggccgctacctcaac
ccgatttacatcatggccgactccggcgcgcgcggatcgaaacagcagatccgccagctt
tccggtatgcgcggtttgatggccaagccgtcgggcgaaattatcgaaaccccgatcacg
gccaacttccgcgaaggtctgaacgtgctgcaatacttcatctcgacgcacggcgcccgc
aaggggctggccgatacggcgttgaagacggcggattcgggctacctgacccggcgcctg
gtggacgtggcgcaggacgtgatcatcagcgagaacgattgcggcaccacggaaggcatt
tacgtggagccgatcatcgaatccggcgaaatcatcgaagccctgcgcgaccgcattgtg
ggccgcgtggcgctcgaagaccagaaggattacgaaggcaacgtgatcgtcggggtcaac
caggagatcacggaagacctggcggcggcgattcaggcggctggtatcgagcgtgtgaag
atccgctcggtgttgacgtgcgaatcgaagcgcggcgtttgcgtggcgtgctacggccgc
aacctggcgacgggacggctggtggagcgcggcgaagccgtgggcgtgatcgcggcgcaa
tcgatcggcgaaccgggaacgcagttgacgatgcgtacgttccacatcggtggtacggcg
acccgaatcaacgagcagagcaagcaggacgccaagagcgacggtttcgcccggtacatc
gggatccagaccgtgcgttcgaaggtgggcgaactgatcgcgatgaaccgcaacggcatc
atggcggtggtcgatgacaagggtcgcgaaaaggaacgctaccccgcggtgtacggcgcg
cgcgtgctggtggaagacggcgctccggtgaagagcaaccaggtgctgctcgagtgggat
ccttacacgttctcgattctgacggaagtcagcggcgtggtgcactttaaggacctgatc
gacggcctgacgatgcaggagcggctggacgaagtcacgggcatgtcgcagttggtggtg
atcgattcccccgacgaaaagcggcagccgatgattcaggttcggccggaaggcgcgacg
ggacgtggttcggaagccaagaagtacctgatgccgacccacgctcacttgatggttcgc
gatggagaggaactccacgccggcgacgtgctggcgaagatcccgcgcgaaaccacgaag
accaaggacatcaccggcggtctgccgcgcgtggtggaactgttcgaagcgcgcaagccg
cgtgagacggccatcatcgcggagatcaacggcaccgtgaagtacggcgaagtcaccaag
ggccagcgcaagatctacgtggaaggcgaagacggcgagaagcgcgagtacgcgctgccc
cgcggtgtgcacatcaacgtccaggaaggcgagaaggtcaaggccggcgagcctttgatg
gacggaccgcgcgacccgcacgatattctggcggtgctcggcgagaaggaactgcagaag
tacctggtgaacgaaatccaggaagtttaccggttgcagggcgtgaatatcaacgataaa
catctcgagacgatctcgcggcagatgatgcggtgggtgaaggtcgaggacatcggggat
acggaattcctgccggaagagatcgtggacaagttcaagttccgcacggaaaacaacaag
gtgctggaagcaggcgggcgaccggcgcagggtaaggctatgctgttgggtatcacgaag
gcctcgctctcgacggattcgttcatctcggcggccagcttccaggagaccacgcgcgta
ctcaccgaagccgcgatcaacggcaaggtggattatctgcgcggtctgaaggaaaacgtg
atcatggggcgcctggttcctgccggcaccggcatggagtattaccgccaggtgaagatc
gcgggcgaggatgtggtggaagagccagtggcggagccgctggacatcatccccggttac
gatgaggagacccggctgcagtatgccggcggacttccggaggacaccggcgaagaatcc
ctcgcggagtag
DBGET
integrated database retrieval system
