Sulfurifustis variabilis: SVA_1768
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Entry
SVA_1768 CDS
T05321
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sva
Sulfurifustis variabilis
Pathway
sva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SVA_1768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sva03400
]
SVA_1768
Enzymes [BR:
sva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SVA_1768
DNA repair and recombination proteins [BR:
sva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SVA_1768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAU48322
UniProt:
A0A1B4V6W0
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All DBs
Position
complement(1801674..1804121)
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AA seq
815 aa
AA seq
DB search
MKLDVYRRKRNFERTPEPSGGRAVSRRRFRYVIQKHGARRLHYDLRLELNGTLKSWAVPR
GPSLDPREKRLAVHVEDHPIEYGKFEGVIPRKQYGAGPVLVWDRGVWKPEGDPEEGYRRG
RLRFELEGEKLRGGFSLVRSGSPGDKENWLLIKRDDEFASSIEITDAMPYSVQTGRTLED
VAEQRARPRASPAPPRRFAPELATLVERPPSGPEWLHEIKYDGYRVLCRLEDGRARLYSR
NGNDLTKRMAAIARAIERLPGLADGWLDGEVVALSADGRTSFPALQSALSDGRDQDLIYY
LFDLPWWNGRDLRGEPLTARKQRLATLLSAHSGGTQLRVSDHVRGKGDVFYQQACAFGLE
GVVSKRIDAPYRNGRTTDWLKAKCRLRQEFVVGGYTDPAGGRAGLGALLLGLYESDAGLR
YCGRVGTGFDDRTLRELRARFGELETKEPPFASPLPREARKGAHWVRPQTVVDVEFAGWT
HEGYVRQASYQGVREDKRPRDVVRELPQALAPSGPPPANGRRVRITNADKVLYPEQGVTK
EELALYYEAVGEWMLPHVVRRPLTLLRCPEGPHKQCFWQKHATRGMPEELRRVPIAEHGG
KDVETYLAVDSLQGVLALVQMGVLEIHVWGSRIDRPDQPDRLIFDIDPDPSLGWDAVLEA
VALVYARVLDLGLAGFVRTTGGKGLHVVVPIARRHDWDEAKAFSKALADDIVRRNPGRYT
SRLALSARKQKVFIDYLRNARGATAVTNYSTRAKPHAPVAVPLAWEELDSELRSDRYNVR
NVYERLRALKRDPWEDFDAARRAITARMKREMGML
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgacgtctatcgtcgcaagcggaacttcgaacggacgccggagcccagcggc
gggcgggccgtgtcccgccggcggtttcgctacgtgatccagaagcacggtgcccgccgc
cttcactacgatctgcggctggagctcaacgggacgctcaagagctgggcggtgccgcgg
ggcccgagtctcgacccgcgcgagaagcgactggcggtgcacgtcgaggatcacccgatc
gagtacggcaagttcgagggcgtgatcccccgcaagcagtacggcgccggaccggtgctg
gtgtgggaccgcggcgtgtggaagcccgaaggcgatcccgaggaaggctaccgccgcgga
cgcctgcgcttcgagctggaaggcgagaagctccggggcggcttcagcctggtgcgttcc
ggcagccccggcgacaaggagaactggctgctcatcaagcgcgacgacgagttcgcgagc
agcatcgagatcacggacgcgatgccgtacagcgtccagacgggccgcacgctggaggat
gtcgcggagcagcgggcccggccgcgcgccagtccggcgccgccgcgccgcttcgcgccg
gagctggcgaccctcgtggagcgaccgccgtccgggccggagtggctgcacgagatcaag
tacgacggctatcgcgtactctgccggctcgaggacggccgcgcgcggctttacagccgc
aacgggaacgacctgacgaagcgcatggcggcgatcgcgcgggcgatcgagcgcctgccc
gggctcgccgacggctggctcgacggcgaggtcgtcgcgctgtccgcggacgggcgcacg
agcttccccgccctgcagtccgccctttccgacgggcgcgaccaggatctcatctactac
cttttcgatctcccgtggtggaacggccgcgacctgcgcggcgagccgctgaccgcgcgc
aagcagcggctggcgaccctgctgtcggcgcactcgggcggcacgcagctgcgcgtgagc
gaccacgtccgcggcaagggcgacgtgttctaccagcaggcgtgcgccttcgggctcgaa
ggcgtggtatccaagcggatcgacgcgccctaccgaaacggccgcacgaccgactggctc
aaggccaagtgccgattgcgccaggagttcgtggtcggcggctacaccgatcccgccggc
gggcgcgccggcctcggcgccctgctgctcgggctctacgagtcggatgccgggctgcgt
tactgcgggcgggtcgggacgggcttcgacgacaggacgctgcgcgagctgcgagcgcgg
ttcggcgagctcgaaacgaaggaaccgccgttcgcgtcgccgctgccgcgcgaggcgcgc
aagggcgcgcactgggtgcggccgcagacggtcgtcgacgtcgagttcgcgggatggacg
cacgaagggtacgtacgccaggcgtcctaccagggcgtgcgggaggacaagcggccgcgg
gacgtcgtgcgcgagctcccgcaggccctcgccccctccggtcccccgccggcgaacggc
aggcgcgtacggatcaccaacgccgacaaggtgctctacccggagcagggagtgaccaag
gaggagctcgctctttattacgaggcggtcggcgagtggatgctgcctcacgtcgtgcgt
cgcccgctcacgctcttgcgctgccccgaaggcccgcacaagcagtgtttctggcagaag
cacgcgacgcggggcatgcccgaggagctccggcgcgtgccgatcgcggagcacggcggc
aaggacgtggagacgtatctcgccgtcgattcgctgcagggcgttctggcgctggtgcag
atgggcgtgctggagatccacgtatggggatcgcgcatcgaccggcccgatcaacccgat
cgcctcatcttcgatatcgacccggatccctcgctcgggtgggacgccgtgctggaggcg
gtcgccctggtgtacgcgcgcgtgctggacctcggtctcgccgggttcgtgcgcacgacc
ggcggaaagggcctgcacgtcgtcgtgccgatcgcgcgccgtcacgactgggacgaagcg
aaggcattctcgaaggcgctcgccgacgacatcgtgcgccggaatccggggcgctacacg
tcgcgcctcgcgctgtcggcgcgcaagcagaaggtattcatcgattacctgcgcaacgcc
cgcggcgcgaccgccgtgacgaattactcgacccgggcaaagccgcacgcgccggtggcg
gtcccgctcgcgtgggaggagctcgacagcgagctgcgttccgaccggtacaacgtgcgc
aacgtctacgagcgcctgcgcgcgctgaagcgcgatccgtgggaggacttcgacgcggcc
cgccgcgcgatcaccgcccggatgaagcgcgagatgggaatgctttaa
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