Sulfurifustis variabilis: SVA_2029
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Entry
SVA_2029 CDS
T05321
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sva
Sulfurifustis variabilis
Pathway
sva03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SVA_2029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sva03400
]
SVA_2029
Enzymes [BR:
sva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVA_2029
DNA repair and recombination proteins [BR:
sva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SVA_2029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAU48581
UniProt:
A0A1B4VC13
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All DBs
Position
2102161..2105616
Genome browser
AA seq
1151 aa
AA seq
DB search
MPSSPGERLAWTRLLGSARGLALAMAAARHRGPLLVVTRSVSEANQLEDEIRFYRTDPAL
PVLPFPDWECLPYDIFSPHQELVSQRLSTLYRLPGLSRGVVIAAVSTLLYRLAPREYVAG
HSLMLSAGERLDLDPFREQLVRSGYHAVSQVMEPGEYAVRGGLVDLYPVGAPRPYRIDLF
GDTVDSIREFDPETQRSGASLSSVQLLPAREYPLTESAIQRFRQTFRARFEGDPQKVGIY
RDVSKGIAPAGAEFFLPLFFERTASLFDYLPGSGVCVLEDGTEQAAADFLREARGRYEQL
RYDVERPLLPPEEIFIGPEAFDASLKGYPCVTLRDFSSEAASSGKTVDYGTAAPAELRVD
HHSAKPYGSLYDYVDAYAGRALIVAETAGRRETLHALLQDHGLDVRDVAGWAEFLKSDAR
LGLTAAPLDRGLALTDPAIAVIAESQLYGERAVQRRRRQKAERDPAAIIRSLAELQVGDA
VVHEDHGVGRYLGLQTIDVGDGPTEFICLEYADGDKLYLPILSLHLITRYTGTDPEQAPL
HKLGGEAWEKAKRRALEKAYDAAAELLEVYALRAARKGHAFNARDVTYHGFAESFPFEET
PDQARAIDEVMRDMETEKPMDRLVCGDVGFGKTEVAMRAAFLAVHGGKQVAVLVPTTLLA
AQHYQNFKDRFAGTPYRVELLSRFRSASEAMEVLEGLKAGKVDIVIGTHRLLQTDVRFDR
LGLLILDEEHRFGVRQKERLKQLRAEVDILTLTATPIPRTLNMALANLRDISIIATAPEG
RLAIKTLVAEWNRDLIREACLREIRRGGQVYYLHNEVRTIERAARELKELIPEAEIGVAH
GQMPERELERVMLDFYHRRYNILVCSTIIESGIDVPTANTIVIERADKFGLAQLHQLRGR
VGRSHHRAYAYLLIPGRNAITADARKRLEAIESLEELGAGFALASHDLEIRGAGELLGEQ
QSGEIDEVGFALYSELLERAVRSLRAGEKLPAKTESREVEINLHAPALLPENYLPDVHMR
LVLYKRIASAESLEALQTLQEEIVDRFGVLPEAGKRLFKAAELKVRAAPLGIKKVDAGAK
GARIEFVEKPPIDPGAIIRLLQSAPRTYRLDGPNRLRILTEMPDPESRVKTITKLFDTLA
PARVEKEELRA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
ttgccctcctcaccgggggagcggctggcctggacgcggcttctaggaagcgcgcgggga
ctcgcgctcgccatggcggccgcgcgccatcgcgggcccctgctcgtggttacccgcagc
gtcagcgaggcgaaccagctcgaagacgaaatccggttctaccgcaccgatcccgcgctt
ccggtgctgcccttcccggactgggaatgcctgccttacgacatcttctccccgcaccag
gagctcgtttcgcagcgcctttcgacgctctaccggttgcccgggctgtcgcgcggtgtg
gtgatcgccgccgtctcgacgctcctttaccgcctcgccccgcgcgagtacgtggccggc
cacagcctgatgctctcggccggcgaacggctcgacctcgacccgttccgggagcagctc
gtccggtcgggttaccacgccgtctcccaggtgatggagccgggcgagtacgcggtccgc
ggcgggctcgtggacctctacccggtgggcgctcccaggccgtaccgcatcgatctcttc
ggcgacacggtcgactcgatccgggagttcgatcccgagacccagcgctccggcgcgtcg
ctctcgtccgtgcagctcctgcccgcgcgggagtacccgctcacggaatcggcgatccag
cggttccgccagacgttccgcgcccggttcgagggggacccgcagaaagtcgggatctac
cgggacgtgagcaaaggcatcgcgccggccggcgcggaattcttcctgccgcttttcttc
gagcgcacggcgtcgctcttcgattacctccccgggtccggcgtctgcgtactcgaggac
ggcacggagcaggccgcggccgactttctgcgcgaagcgcgaggccgctacgagcagctt
cggtacgacgtggagcgcccgctgttgccgcccgaggagatcttcatcggcccggaagcg
ttcgacgcctcgctgaaggggtacccctgcgtgacgctccgcgacttctcgagcgaggcc
gcctcctccggcaagaccgtcgactacggcacggccgctccggcggagctgcgcgtcgat
caccacagcgcaaaaccctacggcagcctgtacgactacgtggacgcctatgccggccgc
gcgctcatcgtcgccgagaccgccggtcgccgggagaccctgcacgccctgctccaggac
cacggcctcgacgtccgggacgtggccggctgggcggagttcctgaagagcgacgcgcga
ctcggcctcacggcggcgcccctcgatcgcggcctggccctcaccgacccggccatcgcg
gtcatcgccgaatcgcagctctacggcgagcgggccgtgcagcggcgccggcggcagaaa
gcggagcgcgatccggccgcgatcatccgcagcctcgccgagctgcaggtcggcgacgcc
gtcgtccacgaagaccacggcgtcggtcgttacctcggcctgcagaccatcgacgtgggg
gacgggccgaccgagttcatctgcctcgagtacgccgacggcgacaagctgtatctgccg
atcctgtcgctgcacctcatcacgcgctacaccggcaccgacccggaacaggcgccgctg
cacaagctgggcggcgaggcgtgggagaaggccaagcgacgcgccctcgagaaggcctac
gacgcggcggcggagctgctcgaggtctacgccctgcgcgcggcgcgcaaggggcacgcg
ttcaacgcccgcgatgtcacttatcacggctttgccgaatcgttccccttcgaagagacg
cccgaccaggcgcgcgcaatcgacgaggtcatgcgcgacatggagaccgagaagcccatg
gaccggctcgtgtgcggagacgtgggcttcggcaagaccgaggtggcgatgcgcgcggcg
ttcctcgccgttcacggcgggaagcaggtggcggtgctggtgccgacgaccctgctcgcg
gcgcagcactatcagaacttcaaggaccgctttgccggcaccccctaccgcgtcgagctg
ctctcccgcttccgcagcgcctccgaggcgatggaggtgctcgagggcctcaaggccggc
aaggtcgacatcgtcatcggcacgcaccgcctgctgcagaccgacgtgcgtttcgaccgg
ctcgggctgctcattctcgacgaggagcaccgcttcggcgtgcggcagaaagagcggctc
aagcagctgcgcgccgaggtcgacatcctgacgctcaccgccacccccatcccgcgcacg
ctcaacatggcgctcgcgaacctgcgggacatctcgatcatcgcgaccgcccccgagggt
cggctcgcgatcaagacgctcgtcgccgagtggaaccgggacctgatccgcgaggcctgc
ctgcgcgagatccgccggggcggccaggtgtactacctgcacaacgaagtccgcaccatc
gagcgcgccgcgcgcgagctgaaggagctgattcccgaggcggagatcggcgtcgcccac
ggccagatgcccgagcgcgagctcgagcgcgtcatgctcgacttctaccaccggcgctac
aacatcctggtctgctcgacgatcatcgagtccggcatcgacgtgccgacggcgaacacg
atcgtcatcgagcgcgccgacaagttcgggctggcgcagctgcaccagcttcgcgggcgc
gtcgggcgctcgcatcaccgtgcctacgcgtacctgctgattcccggacgcaacgcgatc
acggccgacgcccgcaagcggctggaggcgatcgagtcgctggaggagctcggggcgggc
ttcgcgctggcctcgcatgacctggagatccgcggcgccggcgagctgctgggcgagcag
cagagcggcgagatcgacgaagtgggcttcgcgctgtattcggaattgctcgagcgcgcg
gtgcggtcgctgcgggcgggcgaaaagctgccggcgaagacggagtcgcgggaggtcgag
atcaacctgcacgcgcccgcactgttgccggaaaattacctacccgacgtgcacatgcgg
ctcgtgctctacaagcgcatcgcgagcgccgagagcctggaggcgctgcagactcttcag
gaagagatcgtcgaccggttcggggtgttgcccgaggcggggaaacgcctgttcaaggcg
gccgagctcaaggtccgcgcggcgccgctcggcatcaagaaggtcgacgccggagcgaag
ggtgcgcgtatcgagttcgtcgagaagcctccgatcgacccgggcgccatcatccggctg
ctgcagtccgcgccgcgcacctatcgactcgacggcccgaaccgcctgcgcatcctcacc
gagatgcccgatcccgaatcgcgggtcaagacgatcacaaagcttttcgacaccttggcg
cccgccagggtcgaaaaagaggagctgagagcgtag
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