Stella vacuolata: STVA_11460
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Entry
STVA_11460 CDS
T06335
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svc
Stella vacuolata
Pathway
svc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STVA_11460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svc03400
]
STVA_11460
Enzymes [BR:
svc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STVA_11460
DNA repair and recombination proteins [BR:
svc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STVA_11460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBK41126
LinkDB
All DBs
Position
complement(1210505..1213036)
Genome browser
AA seq
843 aa
AA seq
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MARAAPAGLAPYRARRDFTQTSEPEGGGAAEAPGGRFVIQKHDATRLHYDLRLEMDGVYK
SWAVTRGPSLVAGEKRLAVHVEDHPLDYGTFEGTIPKGQYGGGTVIVWDRGTWEPEGDAA
RAYAKGHLDFSLHGDKLSGRWHLVRIRGKPREKRENWLLIKSDDAAARPADAPDILEEQP
DSAQSGRSLADVEAGVATRPASRGRAKAGAKTAKAERATTKSAGAKGAGPKGAVEAPLPD
FVEPCLATLQRKAPAGARWLHEIKFDGYRIQVRIAGGRARLLTRTGLDWTSRFGRDLAAA
LAALPVEEALLDAEIVVEGPAGASDFSLLQADLAEDRTDRFVIYLFDLLHLDGRDLRPVP
LERRKAALAPLLEGADPRVRLSQHFDEEGAIMQRHACRLSLEGVVSKLRAAPYRSGRQKD
WVKAKCSERQEFVIGGFVPSAVSARAIGSLVLGYYEDGQLRHAGRVGTGFSQAIAGDLWR
RLDRTRTRESPFAGRLDAEQSRGVRFVRPEQVAEVEYRGWTADRRLRHAAFRGLREDKPA
AEVGIEAAPETRRGPASGIRLTHPDRVYWPDVGLTKEGLAEYYADVWKWMAPHVVGRPLA
LVRCPDGVGGQCFFQKHAWRGMPSAVRVTRDGDDELLSIDGLDGAIALVQSGVLEIHPWG
ATLQAIDRPDTLTFDLDPGDGVGWEAVIAAAREVRRRLADQDMPAFVKTSGGKGLHVVVP
LEGAAGWDDAKAFCRGVAEAMAADEPRLYVAKAIKAERRGRIFIDYLRNARGATAVVAYG
PRARPGAAVSMPVDWDELDPSIGPDWFTVANAPARLANLKADPWAALRRSAVELPRQARR
RRK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgccgcacccgccggcctggcgccctatcgggccaggcgcgacttcacgcag
acctcggagcccgagggcggcggcgcggcggaggcccccggcggccgcttcgtcatccag
aagcacgacgccacccggctccactacgacctgcggctggagatggacggggtctacaag
agctgggcggtcacccgcggcccgagcctggtggccggcgagaagcgcctggccgtccat
gtcgaggaccatccgctcgactacggcaccttcgagggcaccatcccgaaagggcagtat
ggcggcggcacggtcatcgtctgggatcgcggcacctgggagccggaaggggatgccgcc
cgcgcctatgccaaggggcatctcgatttctccctgcacggcgacaagctgtccggccgc
tggcacctcgtgcggatccgcggcaagccgcgcgagaagcgcgagaactggctgctgatc
aagagcgacgacgcggccgcgcggcccgccgacgcccccgacatcctggaggagcaaccg
gattccgcccagagcggccgcagcctcgccgacgtcgaggccggcgtggcgaccaggccc
gctagccgcggtcgggcgaaggccggtgcgaagacggccaaggccgaacgcgcgacgaca
aagtccgccggggcgaaaggtgcagggccgaagggtgcggtagaggcccccctgcccgac
ttcgtcgagccctgcctggcgaccctgcagcgcaaggcgccggccggcgcccgctggctg
cacgagatcaagttcgacggctaccgcatccaggtgcgcatcgctggcggccgcgcccgg
ctgttgacccggacggggctggactggaccagccggttcggccgcgacctggcggcggcc
ctggccgccctgccggtcgaggaggccctgctcgacgccgagatcgtggtcgaggggccg
gccggcgcgtcggacttctcgctgctgcaggccgacctggcggaggatcgcaccgaccgc
ttcgtcatctatctcttcgacctgctgcatctcgacggccgggacctgcgcccggtgccg
ctggagcgccgcaaggccgcgctggcaccgctgctggaaggcgccgatccgcgggtccgc
ctcagccagcatttcgacgaggaaggcgccatcatgcagcgccatgcctgccggctcagc
ctcgagggcgtggtgtcgaagctgcgcgcggccccctaccgctccggccggcagaaggac
tgggtcaaggccaagtgcagcgagcggcaggagttcgtgatcggcggcttcgtgccctcg
gccgtctccgcacgcgcgatcggctcgctcgtgctgggctactacgaggatggccagctg
cgccatgccggccgggtcggcaccggcttcagccaggcgatcgccggggacctgtggcgc
cggctcgatcgaacccggaccagggaatcgcccttcgccgggcgcctcgacgccgagcag
tcgcgcggcgtgcgcttcgtgcggcccgagcaggtggccgaggtcgagtatcgcggctgg
accgccgaccgccgcctgcgccacgccgccttccgcggcctgcgcgaagacaaaccggcg
gccgaagtcggcatcgaggcggcgcccgagacccggcgcggtccggcgagcggcatccgg
ctgacccatcccgaccgggtctactggccggatgtcggcctgaccaaggaggggctggcc
gaatactatgccgacgtctggaagtggatggcaccccatgtcgtcggccgcccgctcgcg
ctggtgcgctgcccggacggggtcgggggccagtgcttcttccagaagcacgcctggcgc
ggcatgccgtcggccgtgcgggtgacgcgggacggcgacgacgagctgctgtcgatcgac
gggctcgacggggcgatcgcgctggtccagtcgggggtgctggagatccatccctggggg
gcgacgctgcaggccatcgaccggcccgacaccctgaccttcgacctcgatcccggcgac
ggggtcggctgggaggcggtgatcgccgccgcccgcgaggtccgccggcggctggccgac
caggacatgccggccttcgtcaagacctccggcggcaagggcctgcatgtcgtggtcccg
ctcgagggcgcggccggctgggacgatgccaaggccttctgccggggcgtggccgaggcg
atggccgcggacgagccccgcctctacgtcgccaaggcgatcaaggccgagcggcgcggg
cgcatcttcatcgactatctgcgcaacgcccggggtgccaccgcggtcgtcgcctacggc
ccgcgcgcgcgccccggcgcggccgtctcgatgccggtcgactgggacgagctcgacccc
tcgatcgggccggactggttcaccgtggccaacgccccggcgcgcctggcgaacctgaag
gccgacccgtgggccgccctgcgccgcagcgcggtcgagctgccgcgccaggcccgccgg
cgccggaagtag
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