Sturnus vulgaris (common starling): 106852850
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Entry
106852850 CDS
T08833
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106852850 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svg03021
]
106852850 (PCF11)
03019 Messenger RNA biogenesis [BR:
svg03019
]
106852850 (PCF11)
Transcription machinery [BR:
svg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106852850 (PCF11)
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106852850 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
106852850
NCBI-ProteinID:
XP_014731237
LinkDB
All DBs
Position
Unknown
AA seq
1695 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPTVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQRMSPTPHMTVKPPHQTAVPSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSETKGNKTAQAEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKASDISKRDPRLKRHLQDKSEGKEEEIKEKRRN
TEKKEKEDHKTCEHRLVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDKRNVK
QEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEESKNSQQ
NDEHQALVKSPHQRHRENWPAGKGVLSPRAPKQQHRLSVDANLQIPKELTSASKRELLKK
ANDRLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELT
YYEHKAKLKRTQVQHSLSRLDLLDPDDLLDYHLPDALLSGIDCEQAKAKRGVQFDRKEPF
AERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKGARGSDPYDSWGESDEFRDALRQ
QGKSAAEFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEKAPFPE
SPGSRFGGVEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSSRIDGP
AGQAAMRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGTLRFEGPPGQVGGGGP
LRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPMGPRGQ
PGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPMGPHGP
SSGGLRFEGPHGPSGGGLRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDG
CHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQGQARFETAIPQRFDGPHQPASRFDL
PLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFDGSPGP
NFNGPAGPGAQSFPLRAAGHYFEEKGLQGPQYGNFSNMPMGSNQVSLMSGQPGPYGQGQQ
YLPNPGSFVQNPTGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQANETST
QPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVY
ADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVL
KTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSC
YEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQEAEESCDSPKIKEEPNDTPPACAEEN
TPASTEIKTEPEESV
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggcgcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccaactgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttcaaagcaacgcatgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgccatctgaaaaaaacaaaccatcc
ccaagtcctccacttcacgacatcaaaatagtgaacagggatcctcgacttaataggatg
ggtcaacattcttctcatactaaagatcagtctcataggaaagagttttcaccaagtgtg
accagtcagtctgagaccaagggaaacaaaacagcacaagctgaaaagcagaactcaaca
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaggaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataaactgcctgatactaaagacagtaaa
agccaggaatgtgaaagcactaaggcttctgacatcagtaagagggatccaagactaaaa
agacatcttcaagataagtcagaggggaaggaagaggagatcaaagaaaagaggagaaat
acagagaagaaggaaaaagaggaccataagacatgtgaacatagactggtggggagcaga
aataaagtgattaatggtgctgttcagaagcaagacacgactacagaagagtcagaaaag
cagggtggaaaacaaggaagatcaagtagtagaaaacggtcacggtcacgctctcctaag
gcaagatcaccatctacacattctccaaaaagacgagagaggagatcacctaaaagacga
cttcggagtttatctcctacgtcatcaactcctaaaattggaaagatacgtcagataggc
ccgaagcagtctcatgttgaagaaggcacacaagcagcaagagataagagaaatgttaaa
caagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaaagaccccaagagaca
gccacgcagcattctgcaaaagcatctccagatccaaaggagaatgcagaaaactggcag
ggatccaaatcaggcaagagatggaaatctggttgggaagaaagcaaaaactcacagcag
aatgatgaacaccaagcacttgttaaatccccacaccaaagacatcgggaaaactggcct
gctggtaaaggagttctatcaccccgagcaccaaagcagcagcaccggttaagtgtggat
gccaatttacagattcccaaagaattgacatctgcaagtaaaagagaattacttaagaag
gctaatgaccgcttaacatctggtgaaataacacaagatgagtttctcgtggtagctcat
cagattcgacagctgttccagtatcaggaaggaaagcacagatgtaatgtctgggatagc
cctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcggatgcagaattaaca
tattatgaacataaagctaaactgaaaaggacacaagttcagcattcattgtcaaggctt
gatctgttggatcctgatgatcttttggattatcatttacctgatgcattgctttctgga
atagactgtgagcaggcaaaagccaaacggggggttcagtttgacagaaaagaacccttt
gcagaaagatcaaggagacactctcctgtaagtggcactacaagaccttttgctgaaaac
ctgtcaccgcttgagagtcgacgaagacttgaagaccagcgtgctactaaaggagcaaga
ggttctgatccttatgacagctggggagaatcggatgaatttagggatgctctcagacaa
caggggaaaagtgcagcagagttccagaaaatagatggagatgcactttgtaggtttgat
aatcgtgaagaaagacagcttcttgggcaagctggtgttcgagaggaaccaaggtcgcca
tttactgaacgtttcaaaagagctagatatgaagatccagagaaagcaccatttccagaa
agtccaggatcaagatttggaggtgttgaagcaaagcagagaataagtgcactgatggaa
gacagacctctgtttgatggctcacctagaccgactgctgcaagggttggggttgatgga
caaggaagtccttttgttgatggtcctgctgctggttcgagttccagaattgatgggcca
gctggacaggctgctatgagatttgaggggcctttggtgggggcaggtgcatctcagttt
gatggcccactggcaggagcagggggagctggagccctcagatttgatgggccaccagga
cagctggcggggaccctgaggtttgaaggaccgccaggccaggttggtggaggaggtccg
ctgcggtttgagggacctcttgggcctctgcggtttgaggggcctgcagggcagcctgta
ggtggtgctagatttgaaggtcctggggttggtctcaggtttgagggaccccatggtcag
ccttcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcggggtcaa
ccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaa
ccaggaggtggcctcaggtttgaggggccacatttacagccattggggccccatgggcaa
cttggaggtggcctccgatttgaggggccacatggtcagcccatggggccacatggacca
tcaagtggtgggctcaggtttgaggggccgcatggaccatcgggtggtggactgagattg
gaaggaccacgtggacagccaggtctaggtcctaggttgattgatggaccagtacaccag
ggagctggtggacttagatttgatggtcctcttggtcgggctggtccaagatttgatggc
tgtcatggagctggatttgatggtcagcctggacagctgtctctcctgcaaagatttgat
ggaattcatgggcagcctggtccaaggttggcacctggccagcagggacaagcaagattt
gaaacagccatacctcaaagatttgatggacctcaccagccagcctctaggtttgacttg
ccccttggccttcagggcgcacgttttgaaaatgtagctaaccatcctgcctcaagacta
gaaatgtcaccatatggacaaggtggtccatttgttgaacatcctggccaaggctacaat
ggaccagctcatggaatgcagttccagagacctgatatatttgatggttcacccggacca
aatttcaatgggccagctggcccaggagcacagagcttcccactgagagcagctggacat
tactttgaagaaaaaggtctccagggtcctcagtatggaaatttcagtaatatgccaatg
ggaagtaatcaggtttctctcatgtctggtcaaccaggaccttatggccaaggtcagcag
tatttgccaaatcctggaagttttgttcagaaccctacaggagccctttcccattcatat
cctgataaccaccttggacaggttgatgtgaatgaattgtttgctaaactgctgaaaaca
gggatcctcaaattgtctaaaactgattccacttcagcacaagcaaacgaaacatcgacc
cagccgactgctgaagaagaagatgatgatcagaatgaagatcagaatgttccagacctc
actaacttcatagttgaagaacttagacagcgttacgatagtgttataaatcgactgtac
actggaattcagtgttactcttgtggaatgagattcactacttcacagacagatgtttat
gctgatcatttagattggcattatcgtcagaaccggacagaaaaagatgttagcagaaaa
attacacacaggagatggtactacagtttaacagactggattgaatttgaagaaatagca
gatctagaggagcgtgctaaaagccagttctttgaaaaagctcatgaagaggttgtgttg
aagacgcaggaagctgcaaaagagaaggagtttcagagtgtcccagctggaccagctgga
gcggtcgagagctgtgaaatttgccaagaacaatttgaacagtattgggatgaagaagag
gaagagtggcacctgaagaatgctatcagggtagatgaaaagatttaccatccatcttgt
tacgaagattaccagaatacatcatcatttgattgcacaccatctcccagcaagactcct
tcagaaaatccactaaatataatgttggacattgttaaacaagaagcagaagagtcctgt
gactcacctaaaatcaaagaagaacctaatgacacccctcctgcctgtgcagaagagaac
acacctgcatctacagaaattaaaacagaacccgaggagtctgtttaa
DBGET
integrated database retrieval system
