Sturnus vulgaris (common starling): 106858439
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Entry
106858439 CDS
T08833
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03013
Nucleocytoplasmic transport
svg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106858439 (UPF3A)
03015 mRNA surveillance pathway
106858439 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svg03019
]
106858439 (UPF3A)
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106858439 (UPF3A)
mRNA cycle factors
P-body specific factors
106858439 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
106858439
NCBI-ProteinID:
XP_014740572
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
MDTLLLQESPRHDTDAPPNPPPSPPSPLPPPPLHPAPGKQREEKKTALSKVVIRRLPPCL
TKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDN
KGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYCADEDKICANPEILL
GEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRRE
EERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELASEKHKEKGEEADIEENKWDKSPGSG
SIKYKSLESSLKELKEKSQNDSDKEQRDLERRFREKEPERQRYRLDDGRKHRSHYEFDKF
MRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKEDKCDDMASKKERIRNKDRPAM
QLYQPGARIRTHMGPTSKTYDCSGKSFEDALDKKYEADNSAGASFEKTEEAE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggacacgctgctgctgcaggagtcgccgcgccacgacacggacgctccgccgaacccg
ccgccttctccgccatccccgctgccgccgccgccgcttcacccggcgccggggaagcag
cgagaggagaagaaaacggcgctgagcaaagtggttattcgaaggcttcctccttgtcta
accaaggagcaactggaggaacagctgcatcctctacctgcccatgattattttgagttt
tgcactgctgatcccagcctttatcctcatctctactcaagagcatacattaactttaga
aatcctgaggacatccttctttttagagatcgctttgatggctatgtcttcattgataat
aaaggtttggaatatcctgcagtggttgagtttgctccattccagaagatttcaaaaaag
aagctgaagaagaaagatgccaaagctgggagcattgaagatgatccagaatataggaaa
tttttagagaattattgtgctgatgaagacaagatctgtgccaatcctgagattcttttg
ggagagattgaggccaaaacaagggagctcattgctagaagaacaacaccccttttggaa
tatattaaaaatagaaaattagaaaagcagagaatacgagaagagaaaagagaagaacga
aggcggagagaattggagaagaaacgtttacgggaggaagagaaaaggaagcgcagagaa
gaagaaagacgtaaaagaaaagaagtggagaagcaaaagaagatttctgaaaaagaaata
aggatcaagcttctcaagaagcctgaaaaaggagatgaactggccagtgaaaagcacaaa
gagaaaggtgaagaagctgacattgaggaaaacaaatgggataaatcacctggatctggg
agcataaaatacaaatctttggagagttcactgaaagaacttaaggaaaagtcacaaaat
gatagtgacaaagagcaaagagatttggagagaagatttcgagaaaaagaacctgaaaga
caaaggtatcgattggatgatggcagaaagcatagaagtcactatgagtttgacaagttt
atgagaaggaatgaagaagagctgaaatgggggaaaggatacaaccaagacagaggaaag
aaagggaactacaactacagcttcactgtggaggcagtagacaaactgggtaaagaggac
aagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgtccagccatg
cagttgtaccagccaggagctcgcatccgaacacatatgggacctacaagtaaaacctat
gactgcagtgggaaatcctttgaagatgctcttgataaaaagtatgaggcagataattca
gctggagctagttttgaaaagactgaagaagcagaataa
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