Sturnus vulgaris (common starling): 106859746
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Entry
106859746 CDS
T08833
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03013
Nucleocytoplasmic transport
svg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
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]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106859746 (UPF1)
03015 mRNA surveillance pathway
106859746 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svg03019
]
106859746 (UPF1)
Enzymes [BR:
svg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106859746 (UPF1)
5.6.2.5 RNA 5'-3' helicase
106859746 (UPF1)
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106859746 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106859746 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
106859746
NCBI-ProteinID:
XP_014742713
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSM
YFQTHDQIGMISAGPSPVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKAGRG
GRQKSRFGIPASSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccggcccagggccagggg
ccccccggagcagggcagggagctccaggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctgctggct
gagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctgcctgtgcac
gcctgcagttactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtggaaacacctctggcagccacatcgtcaatcacctggtg
agagccaagtgcaaggaggtgacgctgcacaaggacgggcccctgggggagacggtgctc
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatccctgccaaggct
gactccgtggtggttctgctgtgcaggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcgtgg
ctggtgaagattccctcggagcaggagcagctccgggcccgccagatcacagcccagcag
atcaacaaactcgaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aagcctggtgttgatgaggagccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgactcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggccccgctgtggaaaggaattgggcatgtgatc
aaagttcctgatagttctacagattatggtgatgagattgccatcgagctgaggagcagc
gtgggagctcctgtggaggtcacccacaacttccaggtggattttgtgtggaaatccact
tcctttgacaggatgcagagtgctctgaaaacatttgcagtggatgagacctcagtgtct
ggctacatttaccacaagctgctgggccatgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggcctccctgatctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acggtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacattgccgtggaccagctgacagagaagatccaccagaccggc
ctcaaggtggttcgtctgtgtgccaagagcagggaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagagctttcctctgctgatgagaagagataccgggccctg
aagcgcacggcagagagggagctgctcatgaatgcagatgtcatctgctgtacgtgtgtg
ggagctggggaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggccaagcagctgatc
ctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaaggcggccaaggcg
gggctgtcgcagtcgctgttcgagcgcctggtggtgctggggatccggcccatccgcctg
caggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgag
ggctccctgcagaacggcgtcactgcagctgacagggtgaagaagggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggacaggaggagattgcc
agctcaggcacctcttacctgaacaggactgaagcagccaacgtggagaagatcaccacc
aagctgctcaaggctggggccaagcctgaccagatcggcatcatcaccccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctac
caggaagtggaaattgccagcgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaacgaacaccagggcattggcttcctcaacgaccccaggagg
ctcaacgtggccctgaccagagccaggtatggggtgatcattgtggggaaccccaaggcc
ctgtccaagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgagggagagcctgatgcagttcagcaaaccccgcaag
ctggtcaacaccatcaaccccggtgctcgtttcatgaccactgccatgtatgatgcacgg
gaggccatcatccctggctctgtctacgaccgcagcagccaagggcgcccatccagcatg
tacttccagacccacgaccagatcgggatgatcagcgccgggcccagccccgtggctgcc
atgaacattcccatccccttcaacctcgtcatgccccccatgccccccccgggctacttc
ggccaggccaacggccctgctgcaggccgtggagcccccaaaggcaaggctggccgtggt
gggaggcagaagagtcgctttgggatcccagcctcgagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcccagatgagccagcctgggctctcccagcccgagttatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggccctgtcacaggac
tcaacttaccagggggaacgagcttatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
