Sturnus vulgaris (common starling): 106862756
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Entry
106862756 CDS
T08833
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106862756 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svg03400
]
106862756 (LIG4)
Enzymes [BR:
svg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106862756 (LIG4)
DNA repair and recombination proteins [BR:
svg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106862756 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
106862756
NCBI-ProteinID:
XP_014747446
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQPPPKKTVASHVPFADLCSTLERIQKCKSRPEKTKCFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAISNNNVAKNKGQLKKSLLQLI
SQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMGNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHIVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPTSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLSKHWKPYNRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWHECMT
LDMLEDLRSKAQGKLASKHLHIDENDEPHEKKRKTVSKVRKIIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGTGKYSKSELESRIAQCGGSVVQNPGPETYCVIAGAENVRVKNIIAS
NKYDVVRAEWLLQCFQSKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDDAQLK
EVFSRMKDNKVMPLDLIAELEERYWGNSCQLGIFRGSTVYVDCYAVVNEPESKIPGTTLS
IRALELRFYGAKVISHLEEGVSHVVVGEDYSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcttcacaacctcctcctaaaaagacggtggcctcccacgtgcct
tttgcagatctgtgttctactctggagcgaatacagaagtgcaaatctcgtccagagaaa
accaagtgtttcaaggattttctggattcctggaggaaattccatgatgcgcttcatcaa
aaagagaaagatgtcacagattccttttacccagctatgcgacttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acgggctcacgtggagatgctggagattttgcaatgattgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagagcaagtcaatgaacatttagatgcaata
tctaataataatgttgctaaaaacaaaggtcagttaaagaaaagtcttcttcagttaatt
agccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatttaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacaactgcacgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgggtaaccagacattctacatagaaactaagctggat
ggtgaacgcatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggttcattaacaccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatcttaagtagtgtatttaccccg
gtaaagggcaggatacatattgtccataagaaaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaaggaattatggtgaaagatcccacg
tccacttacaagcctgacaaacgtggggaaggctggttaaaaatcaaaccagaatatgtc
aatggactgatggatgaactggatcttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgcgctgttgcagagacaccccctccaaatgaa
aagccgaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaattgtctaaacactggaagccctacaataggaaggatcctcct
ggtaacatcttgtgtggaactgaaaaaccagaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggcacgagtgcatgact
ttagatatgttagaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagaatgatgagccacatgagaaaaaaaggaaaactgtctcaaaggtgagg
aagataattggaatagctgaacagtttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaacaggaaagtactcaaag
tctgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccagggcca
gagacttattgtgtcattgcaggagctgagaatgtcagagtgaaaaacattattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaagcaaaatgttg
gtgccttggcaaccagcctttatgatacacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgatgcacagctcaag
gaagtgttctcaagaatgaaagacaataaggtaatgcctctggacttgattgcagaacta
gaagaacgttattgggggaacagttgtcagctcggtatattcagaggaagcactgtttat
gtggactgttatgctgttgttaatgagcccgaaagcaaaatccctggaactacactgtca
attagagctttggagctccgtttttatggtgcaaaagtaatttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagattattcacgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaattcaaaattgtgtctgaactgtgggtaacacactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
DBGET
integrated database retrieval system
