Streptomyces violascens: HWN34_22675
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Entry
HWN34_22675 CDS
T08842
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svio
Streptomyces violascens
Pathway
svio03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HWN34_22675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svio03400
]
HWN34_22675
Enzymes [BR:
svio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HWN34_22675
DNA repair and recombination proteins [BR:
svio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HWN34_22675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QLA59156
LinkDB
All DBs
Position
5195657..5196598
Genome browser
AA seq
313 aa
AA seq
DB search
MSAVGAGDEERVRAGRRTLTVHRPDKVFYPADGLTKGEVVGYYRDIAPHMVPHLRDRPLM
LERDPEGVGEQPHFMQKNAGAHYPEWVRRAPMPKEDGGTVDHPVCDDAATLVYLADQAVL
TFHRWLSTVGNPRHPDLLVLDLDPPGDDFAAVREAALRLRELLAEVELDPLLMTTGSRGL
HLVVRLDGRAGHDTVRAFAQDAAELLAARHPDRLTTAVRKDRRGDRLFLDSGRNAYAQTA
VAPWSLRSRPGAPVAAPLTWEQLDDPELDARTFSLRDPDGVQAQAASRPWARPPRPRGIA
AAARRLEKLRRSG
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggtgggcgccggggacgaggaacgcgtccgggccgggcggcgcaccctcacc
gtccaccggcccgacaaggtgttctatccggccgacggcctcaccaagggcgaggtcgtc
ggctactaccgggacatcgccccgcacatggtgccccacctgcgcgaccgcccgctgatg
ctggagcgcgaccccgaaggcgtcggtgagcagccgcacttcatgcagaagaacgccggc
gcccactacccggaatgggtacgccgggcgccgatgcccaaggaggacggcggcaccgtc
gaccacccggtctgcgacgacgccgccaccctcgtctacctcgccgaccaggccgtgctc
accttccaccgctggctctccaccgtcgggaacccccgccaccccgacctcctcgtcctc
gacctcgacccgccgggcgacgacttcgcggcggtccgcgaggccgccctgcgcttgcgg
gaactcctcgccgaggtggagctggacccgctgctgatgaccaccggctcgcgcgggctg
cacctcgtcgtccggctcgacggccgcgccggtcacgacaccgtccgcgccttcgcccag
gacgccgccgaactgctggccgcccgccaccccgaccggctcaccaccgccgtccgcaag
gaccgccggggcgaccgcctcttcctcgactccggccgcaacgcctacgcccagacggcc
gtggccccctggtcgctccgctcccgccccggcgcccccgtcgccgcgccgctcacctgg
gagcagctcgacgacccggaactcgacgcccgtaccttctcgctccgtgacccggacggc
gtacaggcgcaggccgcgtcccggccctgggcccggccgccgaggccgcgggggatcgcg
gccgccgcgcggcggctggagaagctgcgacggagtggctga
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