Streptomyces violascens: HWN34_28445
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Entry
HWN34_28445 CDS
T08842
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
svio
Streptomyces violascens
Pathway
svio03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HWN34_28445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svio03400
]
HWN34_28445
Enzymes [BR:
svio01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HWN34_28445
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HWN34_28445
DNA repair and recombination proteins [BR:
svio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HWN34_28445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
zf-TFIIB
NFACT_N
Ribosomal_S13
zf-RRN7
Motif
Other DBs
NCBI-ProteinID:
QLA60203
LinkDB
All DBs
Position
6457334..6458194
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVEALREFLAVHAVGRTVERVLPVAFHVLKTYDPPATDLAGQRITAVDRYGKFLD
LTVGPLHLVTHLARAGWLKWQDTVPAAPPRPGKGPLALRVVLDDGSGFDLTEAGTQKRLA
VYVVRDPADVPGIARLGPDPLADGFDRDRLAALLAPESRLLKGALRDQSLIAGIGNAYSD
EILHAARLSPFKNAGRLTDEETTALYEALRTTLTDAVERGRGVAAGHLKKEKKTNLRVHG
KDGEPCPVCGDTIRSVNFADSSLQYCPTCQTGGKVLADRRLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccggaagtcgaagccctgcgggaattcctcgccgtccacgccgtcggc
cggacggtggagcgggtcctgccggtcgccttccacgtcctgaagacctacgacccgccc
gccaccgacctggccgggcagcggatcaccgccgtcgaccggtacggcaagttcctcgac
ctgaccgtcggcccgctccacctcgtcacccacctggcccgggccggctggctcaagtgg
caggacaccgtccccgccgccccgccccggcccggcaagggcccgctggccctgcgcgtc
gtcctcgacgacggctccggcttcgacctcaccgaggccggcacgcagaaacgcctcgcc
gtgtacgtggtccgcgaccccgccgacgtccccggcatcgcccggctcggccccgacccg
ctcgccgacggcttcgaccgcgaccggctcgccgcgctcctcgcccccgagagccgcctg
ctcaaaggcgccctgcgggaccagagcctgatcgccggcatcggcaacgcctacagcgac
gagatcctgcacgccgcccggctctccccgttcaagaacgccggacgcctcaccgacgag
gagaccaccgccctgtacgaggcgctccgcaccaccctcaccgacgccgtcgagcgcggc
cggggcgtcgccgccggccacctcaagaaggagaagaagaccaacctgcgggtccacggc
aaggacggcgaaccctgccccgtctgcggcgacaccatccgctcggtcaacttcgccgac
tcctccctccagtactgccccacctgccagaccggcggcaaggtcctcgccgaccgccgc
ctcagccgcctgctcaagtga
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