Streptomyces violaceusniger: Strvi_1194
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Entry
Strvi_1194 CDS
T01602
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
svl
Streptomyces violaceusniger
Pathway
svl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Strvi_1194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svl03400
]
Strvi_1194
Enzymes [BR:
svl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Strvi_1194
DNA repair and recombination proteins [BR:
svl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Strvi_1194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEM80950
UniProt:
G2PAE1
LinkDB
All DBs
Position
1023511..1027221
Genome browser
AA seq
1236 aa
AA seq
DB search
MLDKQDPKWQVAMDEIREIMQAVVGWPYSGRPRPVTRVGSFALSASGMEYPFMSLTGLLD
VVVKDPALAEAVRGAADGHRPQVDLVGPPAARPFAIAALARSAGRPVLAVTATGREAEDL
AAALRSLLPPDTVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRQDDPAAGPVSVV
VAPVRSVLQPQVKGLGDLEPVSLRAGGTADLEEIVDGLAAAAYSRVELVEKRGEFAVRGG
ILDVFPPTEEHPLRIEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDQVRER
AAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGSMTVVCEPERVR
TRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRGIADVRDRARELGMMWWSVSPFA
ADEELTQTLAADAAGDTVKLGMHATESYRGDTARALADTKGWLADGWRTVYVTEGHGPAS
RTVEVLGGEGIAARLDGDLTEIKPSVVHVSCGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIRLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGAVDIVIGTHRLFSSETKFKDLGLVVVDEEQRFGVEHKEQLKKLRANVDVLSM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREGQVFY
IHNRVESIDRAAAKLREIVPEARIATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASIEGGV
EEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATSEDDIRAVREELTDRYGKLP
EPVENLLLVAGLRLLARACGVTDITLQGSNVRFSPVELRESQELRLKRLYQRTVIKPATK
QILVPRPSTARIGGKPLVGRELLAWTGEFLTTILGS
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacaagcaggatccaaagtggcaggtggccatggatgagatccgggagatcatg
caggctgtcgtcgggtggccgtactctggaagaccccggcccgtgacacgtgtcgggtcg
ttcgcgttgtccgcctccgggatggaatacccctttatgagcctcaccggtctgctcgac
gtcgtcgtcaaggaccccgcgctcgccgaggcggtgcgcggcgccgccgacgggcatcgt
ccccaggtcgatctggtcggcccgccggccgcccgcccgttcgccatcgccgcgctggcg
cgctccgcgggccgtcccgtactcgcggtgaccgccaccggccgggaggcggaggacctg
gcggccgcgctgcgctcgctgctcccgccggacacagtggtggagtacccgtcctgggag
acgctgccgcatgagcggctctccccgcgctcggacaccgtcgggcggcgcctcgcggtg
ctgcgcaggctggcccatccgcgccaggacgacccggcggccggtcccgtctcggttgtc
gtcgcgcccgtgcggtccgtgctgcagccgcaggtcaaggggctgggggacctggagccg
gtgagcctgcgggccggggggaccgccgacctggaagagatcgtcgacgggctcgccgcc
gccgcgtactcccgggtcgagctggtcgagaagcgcggcgagttcgccgtgcgcggcggc
atcctggacgtcttcccgccgaccgaggagcatccgctccggatcgagttctggggcgac
gacatcgaggagatccgctacttcaaggtggccgaccagcgctccctggaggtcgccgag
cacggcctgtgggccccgccctgccgggagctgctgctgaccgaccaggtgcgggagcgg
gccgcggccctcgccgaggcccatcccgagctgggcgagctgctcggcaagatcgccgag
gggatcgcggtcgagggcatggagtccctggcccccgtcctggtggacgagatggagctg
ctgctggacgtcctgccgaagggcagcatgacggtcgtctgcgagccggagcgggtgcgc
acccgggcggcggacctggtggccaccagccaggagttcctgcaggcgtcctgggcggcc
acggccgggggcggggaggccccgatcgacgtcggcgcggcctccctgcggggcatcgcg
gacgtccgtgaccgggcccgtgagctgggcatgatgtggtggtcggtgagccccttcgcg
gcggacgaggagctgacgcagacacttgccgctgacgcggcgggggacaccgtcaagctg
ggcatgcacgccaccgagagctaccgcggcgacaccgcccgggcgctggccgacaccaag
ggctggctcgccgacggctggcgcacggtctatgtcaccgagggccacggccccgcctcc
cgcaccgtcgaggtactcggcggcgaggggatcgcggcccggctggacggcgacctcacc
gagatcaagccgtccgtggtgcatgtgtcctgcggttcgatcgactacggcttcgtcgac
ccggccctgaagctggccgtgctgaccgagacggatctgtccgggcagaaggccgcgggc
aaggacggggcgcggatgcccgcgcgccgccgtaagaccatcgatccgctcaccctcgaa
gcgggcgacttcatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtatctggtggtcgagtacgccccggccaagcgc
ggccagcccggcgaccggctcttcgtccccaccgaccagctcgagcaggtcaccaagtac
gtgggcggggaggcgccgaccctgcaccggctcggcggggccgactggaccaagaccaag
gcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaggctctactccgcc
cggatggcggcgcccggccatgccttcggcgcggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggttccgatggaccggctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgcgcggccttcaaggcggtccaggacggcaagcaggtcgcggtg
ctggtgcccaccaccctgctggtgcagcagcacttcggcaccttcggcgagcggtacggc
cagttccccgtcaacgtcagggcgctctcccgcttccagaccgacaccgaggccaaagcg
gtgctggaggggctgaaggacggcgcggtcgacatcgtcatcggcacccaccggctcttc
tcctccgagaccaagttcaaggacctgggcctggtcgtcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagttgaagaagctccgcgccaatgtggacgtgctgagcatg
tccgccacccccatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccaccccgccggaggagcgccacccggtgctgaccttcgtcgggccgtacgag
cagaagcagatcggcgcggccatccggcgtgagctgctccgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgggccgcggcgaagctgcgcgagatcgtcccc
gaggcgcggatcgccaccgcccacggccagatgtcggagaccgccctggagcaggtcgtg
gtcgatttctgggagaagaagttcgacgtactggtctccacgaccatcgtcgagtccggt
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcc
cagctccaccagctccgcggccgggtcggccgcgggcgcgaccgcggttacgcgtacttc
ctctacccgccggagaagccgctcaccgagaccgcccatgagcggctggccaccatcgcc
cagcacaccgagatgggtgcgggcatgtatgtggcgatgaaggacctggagatccgcggc
gcgggcaatctgctcggcggcgagcagtccggccatatcgcgggcgtcggcttcgacctc
tacgtccggatggtcggcgaggccgtggccgactaccgggcctcgatcgagggcggcgtg
gaggaggaagcgccgctggaggtcaagatcgagcttccggtcgacgcgcacgtcccgcac
gactacgcccccggcgagcgcctgcgcctccaggcgtaccgcgccatcgcctcggccacc
agcgaggacgacatccgcgccgtccgcgaggagctcaccgaccgctacggcaagctcccg
gaaccggtggagaacctcctcctggtcgccggcctgcgcctgctggcccgcgcctgcggc
gtcaccgacatcaccctccagggctccaacgtccgcttctccccggtggagctccgcgaa
tcccaggaactgcgcctcaagcgcctctaccagcgcacggtgatcaaaccggccaccaag
cagatcctggtcccccgcccctcgaccgcccgcatcggcggaaagccgctggtggggcgg
gagctgctggcatggacgggggagttcctgacgacgatcctggggtcgtga
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