Streptomyces violaceusniger: Strvi_7068
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Entry
Strvi_7068 CDS
T01602
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
svl
Streptomyces violaceusniger
Brite
KEGG Orthology (KO) [BR:
svl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svl03019
]
Strvi_7068
Enzymes [BR:
svl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Strvi_7068
Messenger RNA biogenesis [BR:
svl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Strvi_7068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_25
AAA_30
ResIII
nSTAND3
AAA_11
NTPase_1
AAA
Motif
Other DBs
NCBI-ProteinID:
AEM86436
UniProt:
G2P8M2
LinkDB
All DBs
Position
8086858..8089464
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AA seq
868 aa
AA seq
DB search
MTIPGDPRAEALDRLPVREAVPALLRALEDRGVAVLCAPPGTGKTTLVPLVLAGLVGGGP
VRRVLVAEPRRIAARAAARRMAWLLGERPGGKIGFTVRGERQAGRGTVVEVVTTGVLLQR
LQRDQELPGVDVVVLDECHERHLDADTAAAFLLDVRAALRPDLRLIAASATTDAEGWARL
LGDGGTDGGEGATDCGDGPEGPAPVVSAPGVSHPVEVVWAPPERPVRPPHGMRVDPALLD
HVAAVVRRALREREGDVLCFLPGVGEIARVAGKLGGLAEAEVLQVHGRAPAAVQEAVLAG
TDGGRRRVVLATSVAESSLTVPGVRIVVDCGLAREPRMDHARGLSALTTVRASRAAARQR
AGRAGREAPGVVYRCWPEAEDARLPRFPSPEIAGADLTAFALQTACWGDPDASGLALLDP
PPTGAMTAARETLTAIGAVDAAGRATERGTRMARLGLHPRLARALIDGAKEVGARRAAEV
VALLSEEPPREYGDDLAAAWRTARHGGDPYAVRWRQEARRLEQALTGAGDARPDGARGAQ
RAARGDDAVAGLLAALAFPERVARRRGDRAYLMAAGTGAELGDGSRLGGSPWLAVAVADR
PVTSASARVRLAAVTDEDTARAAAAALASEGAEVRWAEGDVVARRVARLGAIELVSRPLA
KPDPELVRQALLEGLRREGTGLLRWSAQATAVRQRMAFLHQELGGAWPDVSDAALLDRTD
DWLGTELARARGRADLGRVDAGQALARLMPWATGEAARFEELAPERIEVPSGSRVRVDYG
ADRPVLAVKLQELFGWQEAPRIAGGRVPLLVHLLSPAGRPAAVTADLASFWKDGYRSVRA
ELRGRYPKHPWPEDPATAEPTRRTNTRR
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
ttgaccattcctggggacccgcgcgccgaggccctcgaccgccttcccgtgcgcgaggcc
gtgcccgcgctgctgcgcgcgctcgaggaccgcggggtcgccgtgctgtgcgcgcctccg
gggaccggtaagacgacgctcgtgccactggtgctcgccgggctggtgggcggcggaccg
gtgcggcgggtgctggtcgccgagccgcggcggatcgcggcacgggccgccgcgcggcgg
atggcgtggctgctgggcgagcggccgggcgggaagatcggcttcaccgtgcgcggggag
cggcaggccggccgcgggaccgtggtcgaggtggtcaccaccggcgtgctgctgcaacgg
ctgcaacgcgaccaggagctgcccggcgtcgatgtggtcgttctcgacgaatgccatgag
cgccatctggacgcggacacggccgccgccttcctgctggacgtccgggccgccctgcgc
cccgacctccggctgatcgccgcctcggcgaccacggacgcggagggctgggcgcggttg
ctcggcgacggcgggacggacggcggggaaggggcgacggactgcggggacggtcctgag
gggcccgcgccggtcgtctcggcgccgggagtgtcccatccggtggaggtggtgtgggcg
ccgcccgagcgacccgtacggccgccgcacgggatgcgggtggaccccgccctgctggac
catgtcgcggccgtggtgcggcgggcgctgcgcgagcgggagggcgatgtgctgtgcttc
ctgccgggcgtgggcgagatcgcccgggtggccgggaagctgggcgggctcgccgaggcg
gaggtcctgcaggtgcacgggcgggcgccggctgccgtacaggaggcggtgctggccggt
acggacggcggacggcggcgggtggtgctggccacctcggtcgccgagtcgagcctgacg
gtgccgggcgtgaggatcgtcgtggactgcgggctggcgcgtgagccccggatggaccac
gcacgcgggctgagcgcgctgacgaccgtaagggcgtcacgggcggccgcccggcagcgc
gcgggccgtgcggggcgtgaggcgcccggggtggtctaccgctgctggccggaggcggag
gacgcccggctgccgcgtttcccgtccccggagatcgccggcgcggaccttacggccttc
gcgctgcagacggcgtgctggggcgatccggacgcctcggggctggccctgctcgatccg
ccgcccaccggggcgatgacggccgcccgcgagacgctgaccgcgatcggcgccgtggac
gccgccggacgggccaccgagcgcggcacccggatggcccgcctcggcctccacccccgc
ctcgcgcgggcgctcatcgacggcgcgaaggaggtcggcgcacgccgggcggccgaggtg
gtggccctgctgagcgaggagcctccgagggagtacggcgacgatctcgccgccgcctgg
cgcaccgcccgccacggcggcgacccctacgccgtccgctggcgccaggaggcccggcgg
ctcgaacaggccctgaccggcgcgggcgacgcgcggcccgatggcgcacgtggcgcacag
cgggcggcgcgcggcgatgacgccgtggcggggctgctggccgcgctggcgttcccggag
cgggtggcccggcggcgcggcgatcgggcgtatctcatggccgccggaacgggcgcggaa
ctgggcgacggctcgcggctgggcgggtcgccgtggctcgcggtggccgtcgcggaccgg
ccggtcacctccgcgtcggcgcgggtgcggctcgcggccgtcaccgacgaggacaccgcc
cgggcggcggcagcggcgctggcctcggagggtgcggaggtgcgctgggccgagggggac
gtcgtggcgcgccgggtggcccggctcggcgcgatcgagctggtgtcccggccgctggcc
aagcccgatccggagctggtgcggcaggcgctgctggaggggctgcgccgcgaggggacg
gggctgctgcgctggtcggcgcaggccacggcggtccggcagcggatggcgtttctccat
caggagctgggcggggcctggccggatgtctccgacgcggcgctgctggaccgcacggac
gactggctcgggacggagctggcgcgggcccgcgggcgggccgatctggggcgggtggac
gcgggacaggcgctggcccggctgatgccgtgggccacgggtgaggccgcgcggttcgag
gagctggcgccggagcggatcgaggtgccgagcggctcgcgggtgcgggtggactacggc
gcggaccggcccgtgctggcggtgaagctgcaggagctgttcggctggcaggaggcgccc
cggatcgcgggcggacgggtgccgctgctggtgcatctgctgtccccggcggggcgtccg
gccgcggtcaccgccgatctggcgtcgttctggaaggacggctaccgctcggtgcgggcc
gagctgcgcggccggtatcccaagcatccgtggccggaggacccggcgacggccgagccg
acccggcggaccaacacccgccgctga
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