Streptomyces viridifaciens: CP971_01885
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Entry
CP971_01885 CDS
T06960
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svr
Streptomyces viridifaciens
Pathway
svr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP971_01885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svr03400
]
CP971_01885
Enzymes [BR:
svr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP971_01885
DNA repair and recombination proteins [BR:
svr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP971_01885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
PNKP_ligase
Motif
Other DBs
NCBI-ProteinID:
QEU98238
LinkDB
All DBs
Position
384079..385908
Genome browser
AA seq
609 aa
AA seq
DB search
MPQMTVDGRTLALSHLDKVYYPRVGTLKGDVLRYYAAVHTVLLPHLRDRPVSFLRCPDGV
EAEVFVAKNPPPGTPEWVRTVDVPSTGGELRQVVLEDGAALLAVANLGCLELHVPQWHAA
APALADRLVLDLDPGEGANVLTCRAVALLLRERLAADGLSAWVKTSGSKGLHLLVPIEPT
PSATVSGYAKALAAALEVEHPDLVVHTMAKARRRGRVLVDWSQNNAKKTTAAPYTLRARP
LPTVSTPLSWGELERASGETELVFTLAELPGRLAAHGDLFAPLLDPEQARPLPAAPTARE
APAAPTTRAPAPEQPRQVLQPPVEVMRPAAVTAVPPADGLGGGGVQYELKLDGFRCVAFA
RGDRPAFLQSRSGRDLAPEFPPIAAAVARLPEGLVLDAELVAWRAGRFAFEELLHTRQAR
AAAADVVLGLIAFDLLALPGRDVRRLPLTDRRRLLLAALADVPPPIQPVMATTDRTEALE
WVEQLADTGVEGLVCKAAASPYRARGAGRAWVKYRRSDTLDATVRALTGPASRPYALVLQ
LDDGRVFLTTPRLTPVQAREVAQVAGPLLGPPATDPDHGRVHPLTGPLRAELTLTGRPPT
ATFVRLRGD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagatgacggtggacggacgcaccctcgccctgtcccacctcgacaaggtgtac
tacccgcgcgtcggcaccctgaagggcgacgtgctgcgctactacgccgccgtgcacacc
gtcctgctcccccatctgcgcgaccgcccggtgtccttcctacgctgcccggacggtgtg
gaggcggaggtgttcgtcgccaagaacccgccgccgggcaccccggagtgggtgcgcacg
gtggacgtgcccagcaccggcggcgagctgcgccaggtggtgctggaggacggcgcggcg
ctgctggcggtcgccaacctgggctgcctggaactgcacgtcccgcagtggcacgccgcc
gcgccggccctggcggaccggctggtcctggaccttgatccgggcgagggcgcgaacgtc
ctcacctgccgggcggtcgcgctgctgctgcgcgagcggctggccgcggacgggctgtcg
gcctgggtgaagacctccggctccaagggcctgcacctgctggtgccgatcgagccgacg
cccagtgccacggtctccgggtacgcgaaggcgctggccgccgcgctggaggtcgagcac
ccggacctggtggtccacaccatggccaaggcccgccgccggggccgggtgctggtcgac
tggtcgcagaacaacgccaagaagaccaccgccgctccgtacaccctgcgcgcccggcca
ctgccgacggtctccaccccgctgtcctggggcgagctcgaacgggcgagcggggagacc
gagctggtcttcacactcgccgagctgccgggacggctggcggcgcacggcgacctgttc
gcgccgctgctggaccccgagcaggcccggccgctgcccgccgcacccacggcccgggag
gcgcccgccgcacccaccacccgggccccggccccggagcagccccggcaggtgctgcag
ccgcccgtcgaggtgatgcgccccgccgccgtcaccgccgtgccgcccgccgacgggctg
ggcgggggcggcgtgcagtacgagctgaagctggacggcttccgctgcgtcgccttcgcc
cgcggtgaccgtccggcgttcctgcagtcccgcagcggccgcgacctcgcccccgagttc
ccgccgatcgccgccgccgtcgcccggctgccggaggggctggtgctggacgccgagctg
gtcgcctggcgggccgggcggttcgccttcgaggagctgctgcacacccgccaggcccgg
gccgctgcagcggacgtggtgctcgggctgatcgccttcgacctgctcgccctgcccggc
cgcgacgtccggcgcctgccgctcaccgaccggcgccgcctgctactggccgccctggcc
gacgtcccgccgccgatccagccggtgatggccaccacggaccggacggaggcgctggag
tgggtggagcagctggccgacaccggcgtggagggcctggtctgcaaggccgcggcctcc
ccctaccgggcgcgcggcgcgggccgcgcctgggtcaagtaccggcgcagcgacaccctg
gacgccaccgtccgcgccctcaccggtccggcctcccggccgtacgcgctggtgctccaa
ctcgacgacggccgggtgttcctcaccacccccaggctcacccccgtccaggcccgcgag
gtcgcccaggtcgccgggccgttgctcgggccgcccgcaaccgaccccgaccacggccgg
gtgcacccgctcaccggcccgctgcgcgccgaactcaccctcaccgggcgcccgcccact
gccaccttcgtccggttgcgcggggactga
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