Setaria viridis (green foxtail): 117837350
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Entry
117837350 CDS
T07951
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117837350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117837350
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
117837350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
117837350
NCBI-ProteinID:
XP_034572850
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All DBs
Position
9:complement(53015232..53020459)
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AA seq
963 aa
AA seq
DB search
MRGGFEFGSRIQRLPFARMQSKWMDPAGFKRQKRGNEPSSPGTQSQSDIFLHNRCLRLQF
LEQLRELKTGSFDLKAINTKRRELIGIIERLQQVPIQQLYASPVPKPSDSTPHNFGQIGR
NYSSNNVIDLDADKDNFKYHTQANVGNISADSTVSAVDSDDKDRVKSFGHENSSPNQNAN
YIGQHLLLEQPVRHQEIIKLDNCSSSTEPQVKKVKGGMDTDNGSVETKKIILFDSHSTSG
QQPLIKQVHGNINTNIEDDLEEKGKVGRTLDKYVGSYEVPCEIVQNELQSNESNHHEKDS
PVDELDDLWVGMSVALACSEQINQVGQNIVPIESNREETEDACNHDFLMKDDLGIVCRIC
GLIQKRIESIFEHSWKKCKQTYRTYPAKHRKSSDPDSTENPLGTNLNVVPDALSIHPQHS
QQMKPHQVEGFNFLIKNLADQNNPGGCILAHAPGSGKTFLLISFVHSFLARYPAGRPLIM
LPKGILGTWKSEFLRWQVENIPLYDFYSSKANSRSEQCKILKLWEENRSILLLGYQQFAH
IISDDSSDRETLVCREKLLRVPSLVILDEGHTSRNDQTDLLSALETIQTPRKVVLTGTLF
QNHVSEVFNILNLVRPKFLKMQRSRAIMKRILTKVDMVRTSVRSKTISEKVFYELIEENL
QKDSKTMRVMIIQNLRELTENILHYYQGEILKELPGLVDFTVFLNMSTKQEDVVKDLVGL
KRFEAHAKCNVVSLHPCLKDVKNVDKKNRNISKRKMGSIVHGIDINDGVKARFIYNLLSL
SEAAGEKVLVFSQYVRSLDFLEMLFTKMKGWKAGVNTFLMDGGLTQEQREQAVERFNNSP
EAKVFLGSIKACGEGISLVGASRVVILDVHENPAVMRQAIGRAFRPGQSKMVYCYRLIAA
GTLEEADHHTAFKKEQVSKLWFEWDELCNNEDFELTKVDVSDCKDRFLESSALQEDIKSL
FKR
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggtggattcgagttcggtagtagaatccagcggctcccctttgcaagaatgcaa
tcaaaatggatggatcctgctggcttcaaaaggcagaaacgtggcaatgagcctagctca
ccagggacccagtcccagtcagacatcttccttcataatagatgtcttcgtcttcagttt
cttgagcaactcagagaattgaaaactgggagtttcgatctgaaggcaatcaacaccaaa
cggcgtgaacttattggcatcatagaaaggctacagcaagtacctatccaacagctttat
gccagcccagtgcctaaaccatcagattcaacaccacataattttgggcaaattgggaga
aattatagctccaataatgttatcgacctggatgcagacaaagacaattttaaataccat
acccaagctaatgtaggcaacattagtgctgactcaacagtttcagcagttgattctgat
gacaaggacagggttaaatcctttggacatgagaattcatctcctaatcaaaatgctaat
tatatcgggcagcacctgctgcttgagcagcctgtcagacatcaggaaatcatcaagttg
gataattgcagtagcagtactgaaccacaggttaagaaagtgaagggtggcatggacact
gacaacggttctgttgagaccaaaaagattattctatttgatagccacagtacttcgggg
cagcagccattgatcaagcaagtacatggaaacataaacactaatattgaggacgatctt
gaagagaaaggaaaggttggaagaaccttagataaatatgtcggttcctacgaagtacct
tgtgaaattgtacaaaatgaactacagagcaacgagagtaatcatcatgagaaagacagc
ccggttgatgagctggatgatctttgggtgggcatgtcagttgcactggcatgttcagag
cagatcaatcaagtcggtcagaatatagttccaatagagagtaaccgtgaggaaacagag
gatgcatgtaaccatgacttcctgatgaaagatgatttgggcattgtgtgccgtatttgt
ggtctgattcaaaagcgcatcgaaagtatttttgagcattcatggaaaaagtgcaagcag
acgtacagaacatacccagcaaaacacagaaaatctagtgatccagattcaactgagaat
cctttaggtactaatctcaatgtggttcctgatgctctgtcaatccaccctcaacattca
caacagatgaaacctcaccaagtggaaggtttcaatttcctgatcaagaatctagcagat
cagaacaatccaggagggtgtattctagcacatgcgcctggttctggaaagacctttctg
ctgatcagttttgtccacagctttctggccaggtaccctgctgggaggccattgattatg
cttccaaagggtatcttggggacatggaaaagtgagtttctccgctggcaagttgagaac
attcctttgtatgacttttactcctccaaagctaatagccggtctgagcagtgtaaaatt
ttgaaattgtgggaagaaaacagaagcatattgctgcttggctatcagcaatttgcacac
ataatttcggatgactcttctgatagagaaacattagtgtgcagagagaagctgctgagg
gtccctagccttgtaattctagacgaaggccacacctcgagaaacgaccaaacagacttg
ctcagtgcacttgaaactatccaaactcctcgaaaagtggtgctcacaggaaccttgttc
cagaaccacgtaagtgaggttttcaatattttgaaccttgtacgacctaaattcttgaag
atgcagagatcccgtgcaatcatgaagcgtatactgacaaaggtggacatggtacggacg
agtgtgcgatcgaaaaccatatctgaaaaggttttctatgagttgattgaggagaacctt
cagaaggattcaaaaacaatgagagtgatgattattcagaatctacgcgagctaactgag
aacatactccactattaccaaggtgagatcttgaaggagctccctggactcgtggatttc
acagttttcctaaatatgagtaccaaacaggaagatgtcgtcaaggatttggtaggattg
aaaagatttgaagcacatgcaaaatgcaatgttgtttctcttcatccatgcttaaaagat
gtcaagaatgttgacaagaaaaatagaaacatcagcaaaaggaagatgggttcaatcgta
cacggaattgacatcaatgatggggtgaaggcaaggttcatatacaatctgttgtctctt
tcagaagccgcaggagagaaggtacttgtgttcagccagtatgtgcgctctcttgatttc
ttggaaatgctgttcaccaaaatgaaaggatggaaggcaggagttaacactttcctgatg
gatggcggtttaactcaagagcagcgagagcaagcagttgagagattcaacaactcaccg
gaagctaaagtcttcttaggctccatcaaggcgtgcggggaggggatctcccttgttggt
gcatctcgtgttgtcattttggatgtccatgagaatcctgctgtgatgcggcaggcaatc
ggacgggcatttagaccagggcagtctaaaatggtgtactgttaccgcctcattgctgct
ggcacattagaggaagcggatcaccacactgccttcaagaaagagcaagtatcgaagctg
tggtttgagtgggatgagctttgcaacaatgaggattttgagctcaccaaggttgatgtt
tcagactgcaaggacaggtttcttgaaagctctgcacttcaagaagatatcaaatcccta
tttaagaggtga
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