Setaria viridis (green foxtail): 117843377
Help
Entry
117843377 CDS
T07951
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117843377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117843377
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117843377
Spliceosome [BR:
svs03041
]
Complex C
Other components
Step II factors
117843377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
Flavi_DEAD
AAA_24
AAA_30
nSTAND3
AAA_16
ABC_tran
T2SSE
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
117843377
NCBI-ProteinID:
XP_034579847
LinkDB
All DBs
Position
2:complement(40230836..40239664)
Genome browser
AA seq
1283 aa
AA seq
DB search
MEGNGNGNGNGEVDLDATMTTLGPEDNTAQGLILPSKVMYRPQTGKSVLGLDDLARRKRG
SEGSNVFKPPPPKVAVAVDSVDEDEKPAPGENDTTSLSTAGRSNSSRRYRGSGSDDKTSS
NVADEDERIPTPSRRDEARRQEAHISRSSQGSRAHDTPRSYDYYDDRGSRDNRGDHERSA
SIGYSSSGRRRYHDDRESHTRRDERERSTSIDYANKRSRHGHGSRSSRTPARSDWDDGRW
EWEDTPRRDYRDDRPGSRRQHPTRSPMLAAASPDARLVSPWLGGNTPRSAASPWDNVSPS
PAPIRASGSSKGSSYSGSGGRSHQLTFSSTTGSSVIDADRSPSNPDRNHELTEEMMQEMD
YNADRAWYDCEEHTTMFDGDNAMYHDDSSYKKKEAEMPKKLTRRDGSLMTLAQSKKMSQM
TADNAQWEDRQLLRSGAVKGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPV
MPLKDPTSDMAIISRKGSTLVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDA
DTAVVGDQGEINFKEEAKFSQHMKEKVEAVSDFAKSKSLAQQRQYLPIFTVRDDLLQVVR
ENQVVVVVGETGSGKTTQLTQYLHEDGYTTTGVVGCTQPRRVAAMSVAKRVSEEMETELG
DKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDADLDKYRVIVMDEAHERSLNTDVLFG
ILKKVVARRRDFKLIVTSATLNADKFSKFFGGVPVFHIPGRTFPVNIMFSKTPCEDYVEG
AVKQAMTIHITSGPGDILIFMTGQEEIEATCYALAERMEQLISSSTKTVPKLEILPIYSQ
LPADLQAKIFQKAEEGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQ
VFPVSRAAADQRAGRAGRTGPGTCYRLFTESAYQNEMLPNPVPEIQRTNLGNVVLLLKSL
RVENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTEIGWKMVEFPLDPTLAKMLLM
GEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYLQWKSN
QYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCHMEWDVVRKAICSAYFHNS
ARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVDPQWL
AEMGPMFFSVKETDTSLLDHKKRQKEEKTAMEEEMEKLRQEQAEAARIEKEKEREKRAKQ
QQQVAMPGLKKGATYLRPRKMGL
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaacgggaacgggaacgggaacggggaggtcgacctggacgcgacgatgacc
accctgggcccagaggacaacacggcgcaggggctgattctgccgagtaaggtcatgtac
cggccgcagacagggaagtccgtcctaggtcttgacgacctcgcccgcaggaagcgggga
tcggaaggcagcaatgtgtttaagccaccccctcccaaggtagctgttgcggttgattcc
gttgatgaagatgagaagccagcacctggcgagaatgatacgacgagcctgtccacagca
ggtcgcagtaattcatcacgacgctatcgaggaagtggttctgatgataaaacatcttcg
aatgttgctgatgaggatgaaaggatcccaacacccagccgtcgggatgaggcccgccgg
caagaggcccacatctctagaagctctcaaggttcacgtgctcatgacactcctcgtagt
tatgactactatgatgatagaggatcccgtgataatcgtggtgaccatgagagatctgca
tccattggctatagcagcagtggaaggcgaagataccatgatgatagggaatctcatact
aggcgtgatgagcgtgagagatctacgtccattgattacgctaacaagagaagtcgacat
gggcatggctcgagaagttcaagaacacctgcaagatctgattgggatgatggacgctgg
gaatgggaagatacacctcgtcgagattaccgtgacgatcgacctggctcccgaaggcag
catccaacacgatctcctatgcttgctgctgcatccccagatgcacgcttggtgtctcct
tggttaggagggaatacaccacgttcggcagcatccccgtgggataatgtatccccttca
cctgccccgatacgtgcttctggttcctcaaaagggtcttcttattcaggttccggtgga
agatcgcaccagctcaccttttcatcaacaactggttctagtgtcatcgatgctgataga
agcccctcaaatcctgataggaaccatgagctaaccgaggaaatgatgcaagagatggat
tataatgctgatcgtgcatggtatgactgtgaagaacacaccaccatgttcgatggtgat
aatgctatgtatcatgatgacagttcatacaaaaagaaggaagcagagatgccgaagaag
ctgactcgcagagatggtagtctgatgacccttgctcaaagcaaaaagatgtcacagatg
actgctgataatgctcagtgggaggatagacaattgttgagatctggagctgttaaagga
acagaagtccagactgaatttgatgatgaggatgagcggaaagtaatacttcttgtgcat
gacacaaagcctccgttcctggatggacgagttgtatttacaaaacaagcagaacctgta
atgccgctgaaggatcctacatccgatatggctattatttcacgcaaaggttctactctg
gttagggaaatccgtgaaaagcagagcatgaataaatcaaggcaacgattttgggagctt
gctggatctaagcttgggaacatcttgggtgttgagaaaacggctgaacaggttgatgca
gatactgctgttgttggtgaccaaggagagattaattttaaagaagaagcaaagttttct
caacatatgaaggaaaaagtagaagctgtcagtgattttgccaaatcaaaatctcttgct
caacaaagacagtatcttcccatatttactgtccgggatgatctgctacaggttgtgcgt
gaaaatcaagtagttgtggttgttggtgaaactggttctgggaagactactcaactaact
cagtatctgcatgaggatggatatactaccacaggagttgttggttgtacccaaccaagg
cgtgtggctgccatgagtgttgctaagcgagtcagtgaggaaatggagactgagctggga
gataaagttggatacgccatacgatttgaggatgtcactggtccaaacactataataaag
tatatgacagatggagtgctgctccgtgaaaccttgaaagatgctgaccttgacaagtat
cgtgttatcgtcatggatgaagcacatgagaggtcactcaacactgatgttttatttggt
atattgaagaaggttgttgcacgcagacgggattttaaactaatcgtcacatctgcaacc
ctaaatgcagacaagttctccaagttctttggaggcgtgccggtattccatatcccaggc
cggacgttcccagttaacattatgttcagcaaaacgccatgcgaggactatgtggaaggg
gcagtgaagcaggcaatgactatccacatcaccagtggccctggtgatattctcattttc
atgactgggcaggaggaaatcgaggctacctgctatgctcttgctgaacgcatggagcag
ctgatatcatcgtccaccaagactgtgcctaagctggagattctgccgatctactcgcag
ttgccagctgacttgcaagccaagatctttcagaaggctgaagagggtgctcgcaaatgt
atagttgctaccaatattgctgagacctcattgacagtggatggtatcttctacgtcatc
gatactggatatgggaagatgaaggtgtacaacccacggatgggtatggatgccctccag
gttttccctgtcagtcgggcagctgctgaccagcgtgcgggtcgagcaggaagaactggc
cctggcacctgctataggctgttcacagaatcagcctaccagaatgagatgctccctaac
cctgtgccagagatccaaaggaccaacctggggaatgtggtgcttttactgaaatctctg
agagttgaaaacttgcttgattttgatttcatggaccctcctccccaggagaatatcctc
aactccatgtatcaactctgggtattaggagccttgaacaatgttggtggccttacagaa
attggctggaagatggtggagttcccattggacccgactctagcaaagatgcttctcatg
ggagagcagctagggtgccttgatgaggtgctgaccattgtttccatgctatcggtaccc
tcggtttttttccggcccaaagatcgagcagaggagagtgatgcagcacgggagaagttc
tttgtccctgagtccgaccacctgacactcctgaacgtgtatcttcagtggaagtctaac
caataccgaggagactggtgcaatgatcacttcctccatgtcaagggtctccgtaaggct
cgggaagtgagatctcagctgctggacatactgaaaaccctgaagatcccccttacatca
tgccatatggaatgggacgtggtgaggaaagctatctgctctgcttacttccacaactct
gcccgattgaagggtgtcggggagtatgtcaactgccggaacgggatgccttgccatctg
caccccagcagtgcactctacggcctcggctacactccagactacgtcgtctaccacgag
cttgtcctgaccaccaaggagtacatgcagtgcgttaccgcggttgacccgcaatggcta
gcggagatgggtcccatgtttttctcagtgaaggagacagacacttcccttctggaccac
aagaagaggcagaaggaagagaagacggcaatggaggaagagatggagaagctgaggcag
gagcaagccgaggcggcgcgaattgagaaggagaaggagcgggagaagagagctaagcag
cagcagcaggttgctatgcctggtctgaagaagggcgcaacatatctgaggcccagaaaa
atgggtttgtag
DBGET
integrated database retrieval system
