Setaria viridis (green foxtail): 117844130
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Entry
117844130 CDS
T07951
Name
(RefSeq) uncharacterized protein LOC117844130
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117844130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117844130
03019 Messenger RNA biogenesis [BR:
svs03019
]
117844130
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117844130
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117844130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDR1
PK_Tyr_Ser-Thr
Pkinase
CID
ABC1
Haspin_kinase
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
117844130
NCBI-ProteinID:
XP_034580787
LinkDB
All DBs
Position
2:complement(14642328..14656667)
Genome browser
AA seq
1851 aa
AA seq
DB search
MDLPPGAARRTTYSLLSQFPDDAPGPPPATVLQRQSSGSSYGAGSSISASSDYPFHLQAP
ASAAGVAPPGSAAAAAAPGGSSPCKSWAQQAEETYQLQLALALRLCADAACAADPGFLDP
GETGSGRGSGNGRAFPLAHPAPSPESLSHRFWVNGSLSYNSTIPDGFYVIHGMDPFVWSL
CTDIHEENRIPSMESLKSVLPDDSSIQAILIDRRTDFDLGMLESYASSLSSSCTDAKDVV
TQLAKVVSSRMGGTTSNEENLLPRWKECNEAIKSSAGSVVLHLGKLPVGLCKHRSLLFKM
LADKVSIPCRVVKGCKYCKSDDASSCLVRFGLEREYLVDLIGDPGQLSDPDSFVNGPYSL
SVSSPLHPPKFRSLEITSNFSSVAKQYFSDCHSLNLLFSDSSTGAATSAVTTLDQPYSKK
HIAGDEIINSWMPGKGQAAIKPDIIVPEAPREVLPLITSSNIKLDKKKELKLIEETQHLR
HTVSDLSLAADDLIIPWNELILKEKIGAGSFGTVHRADWHGSDVAVKILMEQDFHPERFR
EFMREVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLYKLLHRSGAKEVLDERRR
LNMAFDVAKGMNYLHRRSPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSL
AGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELMTLQQPWCNLNPAQVVAAVGFKGRRLE
IPKDLNPLVAALIESCWANEPWRRPSFTNIMEALRPLIKVPVPQLIRSDSYVPSNFFPYL
QLLPPLCLCAPNPKLPPAMRASASAAPMEASAASRRSAPGPDPGVAKKPRLAQPPPRDPR
SSSYAAASNGAAASAAEQALVDELLGQYRTALGELTFNSKPIITNLTIIAGENLQAAKPI
AALICANILEVPSEQKLPSLYLLDSIVKNIGKDYVKHFSSRLPEVFCKAYKQVDPSIHHS
MRHLFGTWKGVFPPHPLQMIEKDLGFQSSANGSSSATPSRPESQSPRPSNSIHVNPKYLE
ARQQLNQPTKGILGSGAKTAVIADAGNDIERANRLGTDRSAVRRLDAPNARPNIQRTQRD
PFSNPVNEKQAGRDVRGLGFSNISQQAVVGTGQVRSKSKGQDGIGGPYYATGVGSSEEQF
DRRSNFYASKDVRPSGPVRLDSALLPTPSIDPDRIGRPSSNKSWKHSEEEEYVWDDVHSQ
AADYGSNSTVRKGEWMVDDGNAKFASLQRAKWAEGGAVEHLDPRFGLATGQDRRLAAYMD
HEEYIHGKHEVGPRIDREIRPDGQQLPAPRSSSLWASQENTHPDIGLDPRISRFSNQPGE
RSTIYTGTMSASITSSVPVGLSGPYAGRSSLDSANSVPIRSTETFGQQKHRYWSSSPPPA
HSPSSTAPFVRQSSPNPAEPDFYPSRSFSQLGQNPQEEYSLRAAALAKDSHFMSHNAGLP
QGQPSLLATQQGQKYATLQPKSHIKPTDQVQASFSRENSPSLSRPSIQLGEVSLPSDPTP
ITSDLTSASNLLAGLIKSGFKPNNPSDLASLRAQPLVPSGPLPRTLPSPPVASSSLQNAA
GENTTLQTQAPNTARPPLPPGLPPPPTQSAGIAAPLSSLLSSLVAKGLISSPATDSSAAG
PSQPNKASSANATDVAASAMPMPAQKPSVGKETSNSDSSAPTNTLLPKVIKIKTGDLIGL
EFKQEILRECHEHVISSLFGDQNYQCKTCGERFSLEEELRSHAPCPVSRESKSYAGIAPK
KWYPSKNSYIDGSHEIEDSAEASDADLGSAEEVCEFMVPADESQIICALCGEPFDDIYSV
EKGDWMYKDAVFLDYPKREGSCGSNVEGEEHVPIVHVRCMPRGSNNGMEVD
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atggacctgccccccggcgccgcccgccgcaccacctactccctcctctcccagttcccc
gacgacgcccccgggcctccgcccgcgaccgtcctgcagcgccagtccagcggcagcagc
tacggcgccgggagctccatctccgcctccagcgactaccccttccacctccaggccccc
gcctcggccgcgggcgtcgcgccgcccggatcggcggccgcggcggcggctcccggcggg
tcgtcgccctgcaagagctgggctcagcaggccgaggagacctaccagctgcagctcgcg
ctcgcgctccgcctctgcgccgacgccgcctgcgccgcggacccggggttcctcgacccc
ggcgaaacggggagcggcaggggcagcgggaacgggagggccttcccgctcgcgcatccc
gcgccctcccccgagtccctctcgcatcgcttctgggtaaatggctcgctatcatacaac
agcacaataccagatggtttttatgtgattcatgggatggaccccttcgtgtggtcacta
tgcacggatatacatgaagagaaccgcataccctccatggaatccctcaaatctgtcctt
ccagatgattcctcaattcaagccattctcatcgatcggagaactgattttgatttaggt
atgctggagagttatgcttccagcctttcgtccagctgtacagatgccaaggatgtggta
acccaactagccaaagtcgtatcttcaaggatggggggtacaacgtccaacgaagagaac
ttgcttccacgatggaaagagtgcaatgaggccatcaagtcaagtgcaggatctgttgtg
cttcatctgggaaagctccctgtcggtctctgcaagcaccgctcattgctattcaaaatg
ttagcagataaagtcagtattccatgtagagttgtcaagggttgtaaatattgtaaatct
gatgatgcctcctcctgtcttgtacgctttgggcttgaaagggaatacttggttgattta
attggggatcctggccaacttagtgatcctgattcgtttgtcaatggtccctactcacta
tcggtgtcctcacctcttcatcctcccaaatttaggtcattggagatcacttcaaatttc
agctcggtagccaagcagtacttctcagattgccattcactgaatctcttgttcagtgat
tcttctacaggtgctgctactagtgcagtaactactctggaccaaccttattccaagaaa
catattgctggggacgagattattaacagctggatgccaggaaaagggcaagcagcaata
aagccggacattattgtgccagaagctcctcgggaggttttgccactaattacttcctcc
aatataaagcttgataagaagaaagaattgaaattaattgaggagactcagcacttgcgg
catacagtcagtgatctgtcacttgctgcggatgatctgatcattccatggaatgagctg
attttaaaggagaagattggagcaggttcttttggaacagttcatcgtgctgattggcat
ggatcggatgttgcagtcaaaatacttatggagcaggattttcatccggagcgcttcagg
gagtttatgagagaggttgcaatcatgaaaagtctgagacatccaaatattgttctattc
atgggtgctgtcactgaaccgccgaacctatcgatagtcacagaatacttgtctaggggt
agtttgtataaacttttgcataggagtggtgcaaaggaagttctggatgagagacgtcga
ttaaacatggcatttgacgtggccaaaggaatgaactacctgcatagacgcagccctcca
attgttcaccgtgatctgaagtctccaaatcttctagttgacaagaagtatactgtcaaa
gtatgcgactttggcctttcaagactaaaagctaacaccttcctgtcttcgaagtctttg
gctggaactcctgaatggatggcacctgaagtgcttcgagatgaaccatccaatgagaaa
tctgatgtctacagttttggtgtaatcctatgggaactaatgacattgcaacaaccatgg
tgtaacctgaatcctgcccaggtggttgctgctgtaggttttaaaggaagaaggcttgaa
atcccgaaagatctgaatcctctagtagccgctttaattgaatcttgctgggcaaatgag
ccatggcgaagaccctcatttacaaatattatggaagctttgagaccattaattaaggtt
ccagtgccgcagctgattcgttcagattcgtatgtacctagcaacttctttccatatctc
cagctgctccctcccctatgcctatgcgccccaaaccctaagctcccccccgccatgcgc
gcctccgcctccgcggcccccatggaggcctccgccgcctcccgcagatccgcgccgggc
cccgaccccggcgtcgccaagaagccgcgcctcgcgcagccgccgccgcgggaccccaga
tcttcgtcctacgccgccgcctccaatggcgccgcagccagcgccgccgagcaggcgctg
gtcgacgagctgctcggacagtaccggaccgcgctcggggagctgaccttcaactccaag
cccatcatcaccaacctcaccatcatcgccggcgagaacctccaggccgccaagcccatt
gccgccctcatctgcgccaacatcctcgaggttccaagtgaacagaagctaccatctcta
tatctacttgacagtattgtcaagaatattggaaaagattatgttaaacatttctcttca
agactaccagaggtgttctgcaaggcgtataaacaagttgatccttctatacatcatagc
atgaggcaccttttcggaacatggaaaggagtgtttcctcctcatccgctccaaatgatt
gagaaagaccttggttttcagtcatctgccaatggatcctcaagtgccacaccatcgagg
cctgaatctcaatccccgcggccatccaatagcatacatgtaaatccaaaatatttggaa
gcacgacagcagctcaatcaaccaactaaggggatactgggaagtggtgctaagacagct
gtaattgctgatgcaggcaatgatattgagagggctaacaggctaggtactgatagaagt
gcagtgcgacgattagatgctcctaatgctaggcctaacatacagcgcactcagagggac
ccttttagcaatcctgttaatgaaaaacaggcaggtagagatgtcaggggtcttggattc
tccaacatttcacaacaagctgttgtgggaactggtcaagttcgctcaaaatccaaaggt
caagatggaatcggggggccgtattatgccactggtgttggctcttctgaagaacaattt
gaccggcgcagcaacttttatgcaagcaaggatgttcggccatcaggacctgtacgtttg
gatagtgcacttcttccaactccttccattgatcctgatagaattggtaggccttcatca
aacaaaagctggaagcactccgaggaagaagagtatgtgtgggatgatgtacattctcaa
gcagcagattatggtagtaacagcactgtaagaaaaggagaatggatggtcgatgatggc
aatgctaagtttgcaagcctccaaagggctaaatgggcagagggaggagctgttgaacat
ctagacccaagatttggacttgcaacaggtcaagatagaagacttgcggcatacatggat
catgaagagtacattcatggtaagcatgaggtgggaccaagaattgatcgggaaattagg
cctgatggacaacagttgccggcacctcgaagttcctctctctgggcatcccaggaaaac
acacacccagacattgggctggatcctaggatatcaaggttttccaatcagccaggagag
aggtctactatttatactggtaccatgtcagcaagtatcacttcgtctgtacctgttggg
ttatcaggaccttacgctggaagatcaagcctagatagtgcaaacagtgtaccaataaga
tcaactgagacttttgggcagcaaaagcacagatattggtcatcttctcctccaccagct
cactcaccttcatctactgcaccctttgtacgtcagagttctccaaatcctgctgagcct
gatttttatccttccagatcattttctcaattgggccaaaatcctcaagaagaatatagc
ctaagagcggcagcacttgctaaagattctcattttatgtctcacaatgctggacttcct
cagggacaacctagtctactagcaacccagcagggacaaaagtatgctaccttgcagcca
aagtcacatatcaagccaactgatcaagtgcaggcaagcttttcacgtgaaaattctcca
tcgttgtcgagaccttccatccagcttggagaagtctctttacccagtgatcccacccct
ataacctcagatctgacaagtgctagtaatttgttggctggtctcataaagagtgggttc
aaaccaaataaccccagcgatcttgcaagtttgagggcacaacctcttgttccaagtggg
ccacttccacgtactctgccatctcctccagtggcatcttcatcactgcaaaatgcagct
ggcgaaaataccactttgcaaacacaggcaccaaacactgctcgtccacctttgccaccg
ggcctgccaccacctccaacacagagtgcggggatagctgcaccgctctcaagccttctc
agttccctggttgcaaaggggttgatctcttcgccagccactgattcatctgctgctggc
ccttcacagccaaataaagcatcaagcgcaaacgctacagatgttgcagcttcagctatg
cctatgccagctcagaagccttcagttggtaaggagacatctaattctgattcatcagcc
ccaacaaacactttgttacccaaagttatcaaaatcaagacaggtgaccttattggcctg
gagttcaagcaagagatacttcgtgagtgccatgaacatgtgattagcagcctgtttggt
gaccaaaactatcagtgtaaaacctgtggtgaaaggttcagtcttgaagaggaattgagg
tcgcacgcgccatgtcctgtgtcaagggagtctaagagctatgctggtatcgcacctaaa
aaatggtaccctagcaagaacagttacattgatggatctcatgaaattgaggacagcgct
gaggcatctgatgcggatttaggttctgcagaagaagtgtgtgagtttatggttcctgca
gatgagagccaaattatctgtgcgctatgtggggagccatttgatgacatctattctgtt
gagaagggggactggatgtacaaggatgcagtgtttttggattaccccaagagagaaggc
agctgtggaagcaatgttgagggcgaagagcatgtgcccatagtccatgtaagatgtatg
ccaagaggctcaaacaacggcatggaggtggactag
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integrated database retrieval system
