Setaria viridis (green foxtail): 117858698
Help
Entry
117858698 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 35A
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117858698
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117858698
Spliceosome [BR:
svs03041
]
Complex C
Other components
Complex C specific factors
117858698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SecA_DEAD
UTP25
Peripla_BP_1
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
117858698
NCBI-ProteinID:
XP_034597713
LinkDB
All DBs
Position
1:7688619..7692325
Genome browser
AA seq
619 aa
AA seq
DB search
MAATAAASAAAAAAANSDDDNNYEEYIPVAKRRALEAERLRQLRLSKPAPSSASSSLAMP
PPPPPPPTQPSAPDAAAKPSLLVKSTQLKRAAPEVTATEQRIQQEKEVIENLSSDSKSLR
SVREIAKGIIYTEPIQTGWKPPLRLRRMPLAKANELRRKWHIIVDGNDVPPPARDFRDLR
LPEPILRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE
ILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLLPLKDAGYPEIRPLLCIGGVDMRTQL
DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEEDIKEVFDHFKD
QRQTLLFSATMPQKIQNFAKNALVQPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC
LQKTPPPVLIFCENKVDVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKSGKKDVLV
ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLD
LKHLLKEAKQRIPPVLAELDDPLEDEEIIARESGVKGCAYCGGLGHRVGDCPKLEHQKSM
AIAGSRKDYFGGGGYRGEI
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccgcggccgcctcagccgccgccgccgcggcggcgaactccgacgacgac
aacaactacgaggagtacatcccggtggccaagcgccgggccttggaggccgagcgcctc
cgccagctccgcctctcgaagccggcgccgtcctccgcctcctcctccctcgcgatgccg
cccccccctcctccgcccccgacgcagccctccgcccccgacgccgccgccaagcccagc
ctcctcgtcaagtccacgcagctcaagcgcgcggccccggaggtgaccgccacggagcag
cgcatccagcaggagaaggaggtgatcgagaacctctcctccgacagcaagtccctcagg
tccgtacgcgagatcgccaagggcatcatctacacggagccgatccagaccgggtggaag
ccgcccctccgcctccgccgcatgccgctcgccaaggccaacgagctccgccgcaagtgg
cacatcatcgtcgacggcaacgacgtcccgccgcccgcgcgggacttccgcgacctacgc
ctccccgagcccattctccggaagctgcgcgagaggggcatcgtccagcccacgcccatc
caggtgcaggggctgcccgttgtgctctccggccgtgacatgatcggcatcgcgttcacg
gggtcggggaagacgctggtgttcgtgctaccgcttatcatggtggcgctgcaggaggag
atattgatgccgattgtgcctggggagggcccatttgggatgatcatctgcccgtcgcgg
gagcttgctaagcagacttatgatgtgattgagcagttcctccttccactcaaggacgcc
gggtaccccgagataaggccgttgctttgcattgggggtgtggatatgaggacgcagctg
gatgtgttgaagaagggcgttcacattgtggtggcaacgcctggccggctcaaggatctt
cttgccaagaagaagatgaatctcgataactgcaggtacttaaccttagatgaagcggat
aggctggttgacttgggatttgaggaggacatcaaggaggtttttgaccatttcaaggat
caaaggcagacccttcttttttctgctactatgcctcagaagattcaaaattttgcgaag
aatgcccttgtgcaaccagttactgtcaatgtggggagagctggagcagcaaatcttgat
gtcattcaagaagtcgagtatgtcaaggaagatgctagaattatatacctccttgaatgc
ctccaaaaaactccaccccctgttcttatcttttgtgaaaacaaggttgatgtcgactac
atccacgagtaccttcttcttaagggtgtggaggctgttgcgatccatggaggaaaagat
caagaggaaagacagaatgcaattgactctttcaagtctgggaagaaggatgttctggtg
gctaccgatgttgcatcaaagggtcttgatttccctgatatccagcatgtcatcaactac
gacatgcctgccgaaattgagaactatgtccacagaatcggtcgaacaggtcgttgtggt
aagactggcatagcaactaccttcatcaacaagaaccaaaccgagaccacacttctcgat
ctcaagcacctgctgaaggaggcaaagcagaggattccaccggtgttggcggaactcgat
gacccattggaggacgaggaaataatcgccagggagagtggtgttaagggatgtgcgtat
tgtggtgggcttggccatcgtgttggtgactgtccgaagctggagcaccagaagtccatg
gcaattgcaggctcgaggaaagactactttggcggtgggggctaccgaggagaaatatga
DBGET
integrated database retrieval system
