Setaria viridis (green foxtail): 117860844
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Entry
117860844 CDS
T07951
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117860844
09124 Replication and repair
03420 Nucleotide excision repair
117860844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117860844
03400 DNA repair and recombination proteins [BR:
svs03400
]
117860844
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117860844
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117860844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
117860844
NCBI-ProteinID:
XP_034600125
LinkDB
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Position
6:complement(1680761..1687697)
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AA seq
451 aa
AA seq
DB search
MPQVLVVARNFMDMVAALPASKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVAA
AAMEEWVLDEYASKHRVAIDKLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL
PREPIPLSVTGRLPASADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEAPKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLTDVERIAIRDLAELGLVKLQQGRKDSWFIPTQLATNLSASLSDSSSSKEGFVV
LETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESIYGAFENGITAEQIISFL
RQNAHPRVVDKIPVVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDHARDH
GYLLWEDSKRMRLIVRGEFHPEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggttttggtggtggcgcggaacttcatggatatggtggctgcgctgcctgcc
tccaagcttgacatgctctatgactctgccttcatctgtgaggctgtactcaggtcactc
ccgccactagcgaagaagtatgcactgcagatgctgtacgtgttggcaccggtggccgct
gcagctatggaagagtgggtgctcgatgaatatgcttccaagcacagggtcgccattgat
aagctgctccaactcagggtctttgtcgaagtgcgtgatagacgaaaggaggtgagttac
aagatgaatcaaaagttccagggtaatatgcagaagtatttggttgacggtggaagttta
ccaagggaaccgataccgttaagtgtcactggtagattgccagcatcagcagacctggaa
gcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatctcaagtc
gaaaaaggaacaagtttcagctcctccatgatgaagacatttcagcgcggccttctgagt
tcaagggatggtgaagctccaaagttgactgagaatggcttccaatttcttcttatggaa
acaaatgcacaactttggtacataatgagagaatacatttcctctgcagaggaacgtgga
gtggaccctacggagctgatatcatttctcttggaacttagttttcataaattgggagcg
gcttatagtttgaacactctgactgatgttgaacgaattgccatcagggatcttgccgag
ttgggattagtcaaactgcagcagggtcgaaaggatagctggttcattcctacccaatta
gctacaaatctctcagcaagcttgtcagattcatcatccagcaaagagggctttgttgtt
ttggagacaaactttagaatgtatgcatactctacctccaaattgcactgtgaaattctg
cgccttttttcaagggtggagtatcaacttccaaacctcatcgtgggagctattacaaaa
gaaagtatttatggtgcttttgagaatggaataactgctgagcagataatttcatttctt
aggcaaaatgctcaccctcgtgttgttgacaagatacctgttgttccggagaatgtcact
gatcagattaggctgtgggaaactgaccgtaacagggttgagatgattccatcacatttg
tatgaagattttcctagcaaggaatggtttgaacaatgctgtgatcacgcaagagatcat
ggatacttgctgtgggaggactctaagagaatgaggctgattgtacgaggggagttccat
cctgaaatgagggagttcctccgcaggcaaagatga
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