Setaria viridis (green foxtail): 117864302
Help
Entry
117864302 CDS
T07951
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117864302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117864302
Enzymes [BR:
svs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117864302
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117864302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Ribonuclease_3
Motif
Other DBs
NCBI-GeneID:
117864302
NCBI-ProteinID:
XP_034604243
LinkDB
All DBs
Position
7:complement(28452002..28461267)
Genome browser
AA seq
1223 aa
AA seq
DB search
MAAKVRFGLLVAMFQAMSGDKGSAKKRGRLRVFLDRAYVPSGGRDDFFSALRLVLPGLDR
ERGTYGLKEAALAAVLVDALGIAKDSPDAVRLINWRRGGGGRNAGNFALVAAEVLQRRQG
ITSGGLTIKEVNDALDRLAATENRSEKASILSSLIKKTNALEMKWLLMIILKDLKLGISE
KSIFDEFHPDAQDLFNVTCDLKFVCEKLKDRSQRHKRQDIEIGKAVRPQLAMRVRDASAA
WKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKIIKENILVDRCI
LDGEMLVWDTALNRFAEFGSNQEIAKAAREGLETDRQLCYVAFDILYAGDTSVIHQSLTE
RQEILQKVVKPLKGRLEILIPTGGLNARRPSDEPCWSIIAHNLEDVEKFFKDTIENRDEG
IILKDLDSKWEPGDRNGKWLKLKPDYIHAGADLDAIIIGGYYGSGRRGGEVAQFLVGLAV
PSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLKPYFRKNEYPKKPPKFYEVTNNSKERP
DVWIESPDKSVIMSITSDIRTIKSEVFAAPYCLRFPRIQRLRYDKPWHECLDVQAFVDIV
HSSNGTTQRVADDNSLENDNMKRSRTTKKGEKKKSVSIIPSHLMKTDVSGLKGETLIFAN
MIFYFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRQGRIIH
YDWILDCCKEKRPLHLQPKYILYLADFARHKFPEEIDSYADYYYWDIDIADLKQIFSNID
KVAGDSNMVNQYKRKHCIDERFCFFQGCCVYLHNAPLVNVDYNLISDIALKRVKQDLTMH
GGQVCSSIAAATHLVVVSVLQNYNFDILYKSFPPAERRYLHDKRLHVVSNKWLEDSVEKQ
MKLSETAYNLKPDTLEELEIERSEENIRPLDHKFEEHKEVERAHVKHAPRKRSRAASISR
VAKAVPRPARRMRARRGNQQAKIDDDVESEESAPGECQDDQNMDTDYNSKEIGKGISNKD
QGPPRAAFRPVPRTRARREYQQANIDDGGSEESGPSGTDKEDQKLDVDYISKTVGDNSDK
DLHGPPPGAQFVTLGEQEPKGVESNAMEEKPGSPFQRTSAAEVTSSVPGEKIEQMVDPLH
AMLLDMIPTLSQTRTEGASRVPPPTIVEKAPPGVGSNTSKSSDILVPDAGTSGVPAPDPN
AAPPPKKKKVSYKDVASELLKDW
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcggcctcctggtggcgatgttccaggcgatgtcgggtgac
aaggggtcggcgaagaagcgcggccgcctccgcgtgttcctcgaccgggcctacgtgccc
agcggcggtagggatgatttcttcagcgcgctccgcctcgtcctcccggggctcgatcgc
gagcgcggcacctacggactcaaggaagccgccctcgccgccgtgcttgtcgacgccctc
ggcatcgccaaggactcccccgacgccgtccggctcatcaactggcgccgcggcgggggt
ggccgcaacgccggcaacttcgcgcttgtcgccgctgaggtcttgcaacggaggcaaggt
ataacgtctggtggattgacgataaaggaggtcaatgatgcactcgatcgtctagctgca
actgagaacaggtctgagaaggcctcaatactttctagtctgatcaagaaaaccaatgcc
ctagaaatgaagtggcttctgatgattattcttaaagatttgaagttggggataagtgag
aagagcatatttgatgaatttcatcctgatgcccaagacttgtttaatgtcacttgtgac
ttgaaattcgtctgtgagaagctcaaagatcgaagtcagaggcataaacgccaggatata
gaaattgggaaggctgtcaggcctcagctagctatgagagtccgtgatgcttcagctgct
tggaagaagcttcatggaaaacaagtggttgctgagtgcaaatttgatggtgaccgtatt
caaattcacaaaaatggggaagagattcatttcttctcaaggagctttcttgatcactct
gaatacgcacctgggatgtcaaagattattaaggaaaatatcctggtggacaggtgtata
ttggatggagaaatgcttgtctgggacactgcacttaaccgttttgctgaatttggttca
aatcaggaaatagctaaggctgcaagggaggggctggagactgatcgccagctgtgctat
gttgctttcgacatcctttatgctggagataccagtgttatccaccaaagcttgaccgag
cggcaagaaattctacagaaggttgtgaaacctttaaagggtcgtcttgagattttgatc
ccaacaggtggtctaaatgcccgtcgcccttcagatgaaccatgctggtccattattgca
cataatcttgaagatgtcgagaaattcttcaaagatactatcgagaacagagatgaaggc
attatactgaaggaccttgattccaaatgggagcctggtgatcgaaatggaaagtggctt
aaactaaagcctgattatatacacgcaggtgctgatctggatgctattattataggagga
tactatggatctggacgtcgaggaggagaggttgcacagtttttagttggccttgctgtg
ccttcagatgataacagttatcccaaaagatttctttccttttgccgggttggtactggc
ctctctgatgaagagcgtgatgctctcgtcaccaaactgaagccttatttcaggaaaaat
gagtaccccaaaaaaccacccaaattttatgaagttacaaataactcaaaggagaggcca
gatgtctggatagagagccctgataagtcagtcataatgtctataacgagtgatattcgt
acaatcaagtccgaggtatttgctgctccgtactgcttgagattcccccgtattcagaga
ttgagatatgataagccatggcatgagtgccttgatgttcaagcatttgtggacattgtg
cattcaagtaatggaacaacacaaagggtggcagatgataatagcctcgagaatgataac
atgaaacgctcaagaacaaccaaaaaaggggagaagaagaagagtgtttcaatcatccct
tcacatctaatgaagactgatgtgtcaggtctcaagggagaaacgctgatatttgcaaac
atgattttctattttgttaatatcccatcatcatacaatctcgaatattttcataaactg
gttgtggaaaatgggggatctttctccatgaatctgaatgactctgttactcactgcata
gctgcggagaagaaaggtatcaaatatcaggcagccatacgtcagggaaggatcattcac
tatgactggatattggactgttgcaaggaaaaacgtcctcttcatttgcaacctaagtat
atactttatcttgctgattttgccaggcacaaatttcctgaagagattgattcatatgct
gactattactactgggacattgatattgctgacctcaagcagattttcagtaacatcgac
aaagttgctggtgattcgaatatggttaatcagtacaaaaggaagcattgcatagacgag
agattctgcttcttccagggctgctgtgtctacttgcataatgcacctttagtgaatgtg
gactacaatttaatatccgatattgccctgaagagggtgaagcaggatctaacaatgcat
ggtggtcaagtctgcagcagcattgctgcagctactcatttggttgtagtttcagtttta
cagaactacaactttgatatcctgtacaagagcttccctcctgctgaaagacgttatcta
catgacaaaagattgcatgttgtcagtaacaagtggttggaagattcagtggagaaacaa
atgaagctgtctgaaactgcttacaaccttaaaccagatacactagaagaactagaaatt
gaaaggagtgaggaaaatattcgccctctagatcataagtttgaggaacacaaggaggtt
gaaagagcgcatgtcaaacatgcgccaaggaaaaggagcagggcagccagtatttcaagg
gtcgcaaaagctgttcctagaccagctcggcgaatgagggcaagaagaggaaaccagcaa
gcaaaaatagatgatgatgttgaatctgaagaaagtgcccctggtgaatgtcaagatgac
caaaatatggacacagattacaactctaaagagattggaaaaggtatcagcaacaaagat
caaggaccgccccgagctgctttcagaccagtcccaagaacaagggctaggagagaatat
cagcaagcgaatatagatgatggaggatctgaagaaagtgggcctagtggaactgataaa
gaagatcaaaagttggatgtggattacatctctaaaacggtaggagataatagtgataaa
gacctgcacggaccacctccaggtgcccagtttgtcactttgggggagcaagagcccaaa
ggtgtcgaatcaaatgccatggaggagaaaccaggcagtcctttccaaagaacaagtgct
gctgaagtgacgagcagtgtgccgggtgagaagatagaacaaatggttgatccattgcac
gcaatgcttctggatatgataccaacgctgagccagacaaggacagaaggtgcaagcagg
gtgccgcccccaacgatagttgagaaggctccacctggggtaggaagtaacacatccaaa
agttctgatattctggtgccagatgcaggaacatccggggttccagccccagacccgaat
gcagctcctcccccaaagaagaaaaaggtcagttacaaagatgtcgctagtgagcttctg
aaagattggtga
DBGET
integrated database retrieval system
