Setaria viridis (green foxtail): 117865285
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Entry
117865285 CDS
T07951
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117865285
09124 Replication and repair
03420 Nucleotide excision repair
117865285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117865285
03400 DNA repair and recombination proteins [BR:
svs03400
]
117865285
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117865285
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117865285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
117865285
NCBI-ProteinID:
XP_034605334
LinkDB
All DBs
Position
7:complement(23649069..23653368)
Genome browser
AA seq
432 aa
AA seq
DB search
MYGVGGGGGGFNAPSTTSGRRRNPGDEEEDEEEEGAEGRVLEAWERAYADDRSWEALQED
QSGLLRSIDTKTVVHAQYRRRLLLRSAAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGISHRLTEIGGSPESQINALMGKLECSG
DSSLQNALELVNGYLDQVPSYGHKEVLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGL
AAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGVE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAP
FDEVSSVPNRIQRGVQNCFGCQQNLFNPDGQTSLHVRCPKCNQHFCLDCDIYIHESLHNC
PGCESQRSFSSL
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggtgggggcggcttcaacgcgccctccaccacctccggccgg
cgccgcaacccgggcgacgaagaggaggacgaggaggaggagggcgccgagggccgcgtc
ctggaggcgtgggagcgcgcgtacgcggacgaccgctcgtgggaggcgctgcaggaggac
cagtcgggtctcctccgctccatcgacaccaagaccgtcgtccacgcgcagtaccgccgc
cgcctcctgctccgatccgccgctgccgccgcggcccgcatccagaaggggctcatacgc
tacctctacatcgtcatcgacctctcccgggcagcttcagagatggattatcgtcctagt
agaatggcagttgttgcaaagcatgctgaggctttcataagagaattctttgaccagaat
cctttgagccatgttggcctagtgacaattaaagatggtatttctcatcgacttacagag
attggagggagcccagaatcacagattaatgctttgatggggaaacttgagtgttctggt
gattcatctctgcagaatgctctagaacttgtcaatggttatttagatcaagtaccatca
tatggtcacaaggaagtcttaattttgtactctgccctaaatacatgtgatcctggtgat
atcatggagacaatagaaaaatgtaagaagtccaaaattagatgctccgttattggtctt
gctgcagagattttcatatgcaaacatctctgcgaagagactggtggatcctacacggtt
gcactggacgagtctcatttcaaagaattgttgctggaacatgctcccccacctcctgca
attgcagaatatgctgcagctaatttgattaagatgggctttccacagaggggtgttgag
gatcttatatctatctgctcttgtcacaagaaaataaagtctggtgctgaaggttacata
tgtcccagatgcaaagttaatgtgtgtgagcttccgacggaatgtcgaacttgtggccta
acactagttagttctccacacttggcaaggtcatatcatcatctcttcccggtagcacca
tttgatgaggtttcctctgtcccgaatagaatccaaaggggagtacaaaactgttttggc
tgtcagcagaacctttttaaccctgatgggcaaactagcctccatgttcgctgcccaaaa
tgcaaccagcacttctgcctggattgtgatatttacatccatgagagcttgcacaattgc
cctggttgtgagagtcaacgcagtttctcatcactgtga
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