Setaria viridis (green foxtail): 117865618
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Entry
117865618 CDS
T07951
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03082
ATP-dependent chromatin remodeling
svs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117865618
03083 Polycomb repressive complex
117865618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
svs03036
]
117865618
Enzymes [BR:
svs01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117865618
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
117865618
HDAC complexes
Sin3A-HDAC complex
117865618
BRAF-HDAC complex
117865618
REST complex
117865618
SHIP complex
117865618
MiDAC complex
117865618
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
117865618
Heterochromatin formation proteins
Other heterochromatin formation proteins
117865618
Chromatin remodeling factors
NuRD complex
117865618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
117865618
NCBI-ProteinID:
XP_034605732
LinkDB
All DBs
Position
7:18400391..18406435
Genome browser
AA seq
720 aa
AA seq
DB search
MGNAIGFEGGLRVVDGAPVREPLLRVPPLLDDPAPPPPLHVHALVPRPAEPPLVLFVVDV
LVPGRREWGAVGRRRQYPDERGEGEVVVAAEEDVALRGVASREREEEVEDLAGVRAAVVV
VAEEDDQRGGEGVGGERGLEVGPEALQLRDVAVDVPHADHRAGRGRGSRHLAGAFATAAR
RRLHCREKRVASYPVELRLAAPATLHYRGHNINRSILGAVDQGRPSRSRTFPFLFRPVLT
AALPFLALVHDRPAPPPSAAAVAARSGPGCVSLRGPDFAAPAAAALGSEAMLEKDRISYF
YDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYGLHKKMEIYRPHKAYPVELAQFHSADYVE
FLHRITPDTQDLYGSELTRYNLGEDCPVFDNLFEFCQIYAGGTLDAARRLNHKTCDIAIN
WAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVM
TVSFHKYGDLFFPGTGDIKDIGEREGKYYAINIPLKDGIDDANFTRLFKTIIAKVVETYL
PGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGYTKENVARCWA
VETGVLLDTELPNEIPNNDYIEYFAPDYTLKVPNLNMDNLNSKTYLSSIKVQVMESLRSI
QHAPGVQMQEVPPDFYIPDFDEDELDPDERVDQHIQDKQIHRDDEYYEGDNDNDHDDGTR
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgccataggattcgaaggtgggctgcgcgtcgtagatggagcccctgtacgg
gagccccttcttcgggttccacctctccttgatgaccccgccccaccgcctcccctgcac
gtgcatgccctcgtaccccggcccgcggaaccacccctcgtgctcttcgttgtggatgta
ctcgtcccaggtcgccgagaatggggagccgtcgggaggcggcggcagtaccccgacgaa
cgcggcgaaggcgaggtcgtggttgccgcagaggaagacgtggcgctgcgcggagtggcg
tcccgggagcgcgaggaggaagtcgaggacctcgcgggtgtgcgggccgcggtcgttgta
gtcgccgaggaagatgaccagcgcggtggcgaaggcgtcggcggggagcgcggactggag
gttggaccagaggctctccagcttcgcgatgtagccgtggacgtcccccacgcagatcac
cgtgcggggcggggccgagggagcagacatctcgccggcgctttcgccaccgctgctcgc
cggaggcttcactgccgagagaagcgggtagcgagttatcctgttgagttgagactcgcg
gcgccggctaccttacattaccgcgggcacaatatcaaccgttcgatcctgggagctgtc
gatcaaggccgtccgtcccgatccagaacattccccttcctcttccgtcccgttctgacg
gcggctctccccttcctcgcgctcgtgcacgaccggcccgccccacctccctccgccgcc
gccgtcgcggctcggtctggtccgggctgcgtttccctgcgcggccccgatttcgcagcc
cctgcggcagccgcgctcgggagtgaggcgatgctggagaaagaccggatatcctacttc
tacgacggagatgtgggcaatgtctactttgggccaaatcaccccatgaagccacatcgt
ctttgtatgacgcatcaccttgttctttcatatggacttcataaaaagatggagatatat
agaccacacaaagcatatccagtagagcttgcccagttccattctgctgattatgtggaa
ttcttgcaccggataactcctgacacccaggacctatatggaagtgaattaactagatac
aatcttggagaagactgcccggtctttgataatttgtttgagttctgccaaatctatgct
ggaggaactttagatgctgctcgcagattaaatcataaaacatgtgatattgccattaat
tgggccggtgggctgcatcatgcaaaaaagtgtgaggcatcaggcttctgctacattaat
gatctagtcttgggaatcctggagcttctcaagtaccatgccagggttctttatattgac
attgatgtccatcatggagatggagttgaagaagccttttatttcactgacagggtaatg
actgtgagtttccacaagtatggtgacctgttctttcctggcacgggtgatattaaggat
attggagaaagggaaggaaaatattatgccatcaacattccacttaaagatgggatagat
gacgccaactttactcggctttttaaaacaattattgccaaggttgttgagacatatttg
cctggtgccattgttcttcaatgtggggctgattcattggcaagggaccgtctaggctgc
ttcaatctctccatcgaaggccatgctgaatgtgtaaagtttgttaagaaattcaatatt
ccccttctggtaactggaggtggtggatacaccaaggagaatgtagcacggtgttgggct
gttgaaactggggtccttttagacacagaacttccgaatgagattccaaacaatgattac
attgaatactttgctccggattatacattgaaagttccaaatctgaacatggacaatttg
aatagtaagacctatctcagttcaatcaaagtgcaagtcatggagagtctgcgctccata
cagcacgcgcctggcgttcagatgcaagaggttccacctgatttttatatcccagatttt
gatgaagatgagctggatcctgatgagcgtgttgaccagcatatccaagacaagcagatt
caccgtgatgatgagtactatgaaggtgacaatgacaacgaccatgacgatggcacacgc
tga
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