Streptomyces vietnamensis: SVTN_15310
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Entry
SVTN_15310 CDS
T03586
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
svt
Streptomyces vietnamensis
Pathway
svt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SVTN_15310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svt03400
]
SVTN_15310
Enzymes [BR:
svt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVTN_15310
DNA repair and recombination proteins [BR:
svt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SVTN_15310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJF65576
UniProt:
A0A0B5HYW6
LinkDB
All DBs
Position
complement(3471248..3474778)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDVVVKDAALAEAVKAAADGNRPHVDLVGPAAARPFAVAALARDSGRPVLAVTA
TGREAEDLAAALRSLLDPDTVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRDDDP
AAGPVSVVVAPIRSVLQPQVKGLGDLEPVALRSGQTADLDDVVEGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERAAALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELGMA
WWSVSPFAADVDQGADTLTLGMHAPESYRGDTARALADTKGWLADGWRTVYVTEAHGPAS
RTVEVLGGEGIAARLDADLAEISPAVVHVSTGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGQRMPAKRRKTIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVRALSRFQTDTESKA
TMEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVDSIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGGV
EEEAPLEVKIELPVDAHMPHDYAPGERLRLQAYRSIASANSEEDIRAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPKSVIKPAVH
QILVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgcacggcctgctcgatgtcgtcgtcaaggacgccgccctcgccgaggcggtg
aaggccgccgccgacgggaaccgtccgcacgtggacctggtcgggccggcggccgcgcgg
ccgttcgccgtggccgcgctggcccgggactcggggcggccggtgctcgcggtgaccgcg
accggccgggaggccgaggacctcgccgccgcgctgcggtcgctgctcgacccggacacg
gtcgtcgagtacccctcctgggagaccctgccgcacgagcggctctcgccccgctccgac
accgtcggccgccgcctcgccgtgctccggcgactggcccacccccgcgacgacgacccc
gccgccgggcccgtctccgtcgtcgtcgcgcccatccgttccgtactccagccgcaggtc
aagggccttggggatctcgaacccgtggcgctgcggtccggacagaccgccgacctcgac
gacgtcgtcgaggggctcgcggccgccgcgtactcccgggtcgagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccg
ctccggatcgagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcggtccctcgaagtcgccgagcacgggctctgggcgccgccctgccgcgagctgctc
ctgaccgacgaggtgcgcgagcgggccgcggcgctcgccgaggagcaccccgagctgggc
gaactcctcggcaagatcgccgaggggatcgcggtcgagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgcccaagggctccatggccgtc
gtctgcgaccccgagcgggtacggacccgggccgccgacctcgtcgccaccagccaggag
ttcctgcaggcctcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gcggcctcgctgtgggggatcgcggacgtacgggaccgggcgcgcgagctgggcatggcc
tggtggtcggtgtcgccgttcgcggcggacgtcgaccagggggccgacacgctcaccctc
ggcatgcacgcccccgagtcgtaccgcggcgacaccgcccgcgcgctcgccgacaccaag
ggctggctggccgacggctggcgcacggtgtacgtgacggaggcccacggccccgcgtcc
cgtacggtcgaggtcctcggcggcgagggcatcgccgcccgtctcgacgccgacctcgcc
gagatctccccggccgtcgtgcacgtgtcgaccggctccatcgactacggcttcgtcgac
cccgcgctcaagctcgccgtgctcaccgagaccgacctgtccggccagaaggcggccggc
aaggacggccagcggatgccggccaagcgccgcaagacgatcgacccgctgaccctggag
gtcggcgactacatcgtgcacgagcagcacggcgtcggccggtacatcgagatggtgcag
cggaccgtgcagggcgcgacccgcgagtacctcctcgtcgagtacgcgcccgcgaagcgc
ggccagcccggcgaccgcctgtacatcccgaccgaccagctggagcaggtcaccaagtac
gtgggcggcgaggcgccgaccctgcaccggctcggcggcgcggactggacgaagacgaag
cagcgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctgtacagcgcc
cgcatggcggctcccggccacgccttcggcccggacacgccgtggcagcgggagctggag
gacgccttcccgtacgcggagacgcccgaccagctgtccaccatcgccgaggtgaaggag
gacatggagaagacggtccccatggaccgtctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgggcggccttcaaggccgtccaggacggcaagcaggtcgcggtc
ctcgtcccgacgacgctgctcgtgcagcagcacttcggcacgttcagcgagcggtactcg
cagttcccggtgaaggtgcgggcgctgtcgcggttccagacggacaccgagtcgaaggcg
acgatggaggggctgcgggagggctcggtcgacgtcgtcatcggcacccaccgcctgttc
tcctccgagacgaagttcaaggacctgggtctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgggcgaacgtcgacgtcctgacgatg
tccgccaccccgattccgcgcaccctggagatggcggtgacgggcatccgcgagatgtcg
acgatcacgaccccgccggaggagcggcacccggtcctcaccttcgtgggcccgtacgag
gagaagcagatcggcgcggccatccgccgcgaactcctgcgcgagggccaggtcttctac
atccacaaccgggtcgactcgatcgaccgggcggccgcgcggctgcgcgagatcgtcccc
gaggcgcggatcgcgacggcgcacggccagatgtcggagcaggccctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctcgtgtcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctgtcg
cagctccaccagctgcgcggccgtgtcggccgtgggcgcgagcggggctacgcgtacttc
ctctacccgccggagaagccgctcaccgagaccgcgcacgagcggctcgcgacgatcgcc
cagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggtcacatcgcgggcgtcggcttcgacctg
tacgtacggatggtcggcgaggccgtcgccgactaccgggcgcagatggagggcggtgtc
gaggaggaggccccgctggaggtgaagatcgagctgccggtcgacgcccacatgccgcac
gactacgcgccgggggagcggctgcggctccaggcctaccgctcgatcgcctccgcgaac
tcggaggaggacatcagggccgtgcgcgaggagctcaccgaccggtacggcaagctgccc
gagccggtcgagaacctgctcctggtcgcgggcctgcggatgctggcgcgcgcgtgcggg
gtcggcgagatcgtcctccagggctccaacatccgcttcgcgccggtggagttgcgcgag
tcgcaggagctgaggctgaagcgcctccacccgaagtccgtcatcaagccggccgtccac
cagatcctggtgccgcgcccgacgacggggaagatcggcgggaagccggtggtcggccgt
gaactcctcgcgtggacgggcgagttcctgacgacgatcctcgggggctga
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