Formicincola oecophyllae: E3E12_00665
Help
Entry
E3E12_00665 CDS
T06093
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
swf
Formicincola oecophyllae
Pathway
swf03030
DNA replication
swf03430
Mismatch repair
swf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3E12_00665 (dnaE)
03430 Mismatch repair
E3E12_00665 (dnaE)
03440 Homologous recombination
E3E12_00665 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swf03032
]
E3E12_00665 (dnaE)
03400 DNA repair and recombination proteins [BR:
swf03400
]
E3E12_00665 (dnaE)
Enzymes [BR:
swf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E3E12_00665 (dnaE)
DNA replication proteins [BR:
swf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E3E12_00665 (dnaE)
DNA repair and recombination proteins [BR:
swf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E3E12_00665 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QDH12958
UniProt:
A0A4Y6U8R0
LinkDB
All DBs
Position
complement(150555..153983)
Genome browser
AA seq
1142 aa
AA seq
DB search
MSHAGFVHLHNHSAYSLSQGAIRVPQLISAAVAQAMPAVALTDSGNLFGMLEFSIYARKA
GLQPLIGCQLALPPLSDKPGSRSMPVVALARTDEGLTNLQHLSTAGYMQGDSADPAIPLE
MLCARSEGLLLLTGGNRGPLNQLLLHDRDDEARTMLAAMRDAFGPYLAVELNRLGDAAEA
KTERPLVAMADGMGVPLVATNDCFFLNPAMHEAHDALLCIAQGTLMAHEDRWRVSPESWF
KPAEDMRALFQDLPEACDNTLVVAQMCATAAPTRKPLLPTCRKVREGSNEDETLRAMARE
GLAKRLEVIKPTPDLKREYEERLDYELGVIANMGFPGYFLIVADFIQWAKAHGIPVGPGR
GSGAGSLVAFALTITDIDPIPFGLLFERFLNPERVSMPDFDVDFCQDRRDEVIRYVRDEY
GPSRVAQIITFGKLQAKAAVRDTGRVLGLPYGLVNRVAELIPNNPAKPTPLKEAIASEPR
LQEMRDSDENVKRLLTIALQLEGLFRHASTHAAGVVIGGRELVDLVPLYRDPRSDMNVTQ
FNMKFVEQAGLVKFDFLGLTTLTILKRGVDFLAGLGVEVNLSHIPLDDKKTFDMLARGDT
AGVFQFEGAGMRDMLRQMQASSIKDLIAGVSLYRPGPMENIPDYCRRKHGEHWEAPHEEI
RPILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIAAEMDKQRGIFIEGATK
RAIDPAKAAEVFDLMAKFANYGFNKSHAAAYALVSYQTAWMKANHPVAFLAGCMSLAREK
TDKLAGLCQEARRMGIKVLPVDINKSQTDFSIEAQEDGSHAIRYALSAVKRVGAGAMDAL
VAARGGKPFADITDFATRCDGRQVNKLALESLAKAGAFDSMGLDRHAVCASADTIMKRAH
SESQQRAMGQGGLFGAGEESALREVVGLEKVTPWPDFERLSNEAAAIGFHMSGHPLDAYG
RILKKLDVTPLGSLEAKAQRGGGRVRLAGCVVDKKERPTRKGTKMAWVGLSDPTGSGEVT
LFAETLGACRDMLVVGQPILVTADLKSDGEGFRLTASHVVGLEAAAAQESTELNIWISGA
SALDDLQPLLEGARGGRGRIVFRAALDKQRDVPVTLADPYRVTPRLMERLRVLPGVTRLE
AA
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgccggcttcgttcacctgcacaaccattccgcctattccttgagccaaggc
gccatcagggtgccgcagctcatcagcgccgctgtggcgcaggccatgccagccgtggcc
ttgacggacagcggcaatctcttcggcatgctggaattctccatctatgcccgcaaagcg
gggctgcagcccttgattggctgccagctggccctgccccccctcagcgacaagccaggc
agccgctccatgcccgttgtggccctggcgcgcactgacgaagggctgaccaacctgcag
cacctttcaaccgccggctacatgcaaggcgactcagccgatccagccatccccctggaa
atgctgtgcgcgcgttccgaaggcttgctgttgctgacagggggcaacagggggcccttg
aaccagctcctacttcatgaccgcgatgatgaggccaggaccatgctggcagccatgcgg
gacgctttcggtccctacctggctgtggagctcaaccgcctgggtgacgccgctgaagcc
aagacggaacggcccctggtggccatggccgatggcatgggcgttcccctggtggccacc
aatgactgcttcttcctgaaccccgccatgcatgaggcccacgacgccttgctgtgcatt
gcccaaggcaccctgatggcccatgaggaccgctggcgcgtctcgccagaatcctggttc
aagcctgctgaggacatgcgcgccctgttccaggacctgcccgaggcctgcgacaacacc
cttgtggtggcgcagatgtgcgcaacagctgcccccacccgcaagccccttctgcccacc
tgcaggaaggtgcgtgaaggcagcaacgaggacgagaccctgcgcgccatggccagggag
gggctggccaagcgtcttgaggtcatcaagcccacccctgacctcaagcgggagtatgag
gaacgccttgattacgagcttggcgtcatcgccaacatgggcttccccggctacttcctc
atcgtggcggacttcatccaatgggccaaggcgcacggcatccccgtgggccctgggcgc
ggttcaggcgctggcagccttgtggccttcgcgctgaccatcacggacatcgaccctatc
cccttcgggcttcttttcgagcgcttcctgaaccctgagcgcgtctccatgccggatttc
gacgttgatttctgccaggacaggcgcgatgaggtcatccgctacgtgcgcgatgaatac
ggccccagccgcgttgcccagatcattacctttggaaagctgcaggccaaggcggccgtg
cgcgacacggggcgcgtccttgggctgccctatgggctggtcaaccgcgttgctgaactc
atccccaacaacccagccaagccaacgcccttgaaagaggccatcgccagcgagccgcgc
ctgcaggagatgcgcgacagtgatgagaacgtgaagcgcctcctcaccatcgcgcttcag
ctagaagggctgttccgccatgcctccacccatgcggcgggcgtggtgattggcgggcgg
gagctggtcgaccttgtgccactttaccgtgacccgcgctctgacatgaacgtcacgcag
ttcaacatgaagttcgttgagcaggctggcctggtgaagttcgacttcctgggcctgacc
acgctcaccatcctcaagcgtggggtggatttcctggcggggcttggtgtggaggtgaac
ctttcccacatcccgctagacgacaagaagaccttcgacatgctggcgcggggcgacacg
gctggcgtcttccagtttgaaggcgcaggcatgcgcgacatgctgcgccaaatgcaggcc
agctccatcaaggacctaatcgctggcgtttccctctaccggcctggcccgatggagaac
atccctgattactgccgccgcaaacacggggagcactgggaggcgccgcatgaggagatc
cgccccatcctggaggagacctatggcatcatggtctaccaggagcaggtgatgcagatc
gcccagaaaatggcgggctacagccttggcggcgctgatttgctgcgccgcgccatgggc
aagaaaatcgctgctgagatggacaagcagcgcggcattttcattgaaggggccaccaag
cgcgccatcgaccccgccaaggcggctgaggtgttcgacctcatggcgaagttcgccaat
tacggcttcaacaagtcgcacgccgcagcttacgcgctggtctcctaccaaacagcctgg
atgaaggccaaccacccagtggccttcctggctggatgcatgtcgcttgcgcgtgaaaag
accgacaagctcgctggcctctgccaggaggcgcggcgcatgggcatcaaggtgctgcct
gtggacatcaacaagtcccagaccgatttctccattgaagcgcaggaggatggcagccac
gccatccgctacgcgctttcagcggtcaagcgtgtgggcgctggcgccatggacgccctg
gtggcggcgcgcggcggcaagccttttgccgacatcaccgatttcgccacgcgctgcgat
gggcgccaagtcaacaagctggcccttgagagcctggccaaggctggcgcttttgattcc
atggggctggaccgccacgctgtctgcgccagtgctgacaccatcatgaagcgcgctcat
tcagaatcccagcagcgcgccatggggcagggtggcctgttcggcgctggggaggaaagc
gccctgcgggaggttgtcgggctggagaaagtcaccccatggcctgatttcgagcgcctc
tccaatgaggcagcagccatcggcttccacatgagcggacacccccttgacgcctacggg
cgcattttaaagaagcttgacgtcacccccctgggctcgcttgaagccaaagcccagcgc
ggcggcgggcgcgtgcgcctggctggctgcgttgtggacaaaaaggaacgccccacccgc
aaaggcactaaaatggcctgggtggggttgagcgaccctacaggctctggggaggtgacg
cttttcgcagaaacattgggcgcctgtcgcgacatgctggtggtgggccaacccattttg
gtgactgctgaccttaaatctgatggcgaaggcttccgtttgacagcaagccatgtggtg
gggctggaggcagcggcagcgcaggaaagcacggaacttaatatctggataagcggtgcg
agcgcccttgatgacctacagcccctgcttgaaggggcacgtggggggcgcgggcgcatt
gttttccgcgctgccctggacaagcagcgtgatgtacctgtgacgttggctgacccttac
cgcgtaacgccaaggttgatggagcggctgcgcgtcctgcctggcgtcacccgcctggaa
gctgcctga
DBGET
integrated database retrieval system
