Rhizorhabdus wittichii RW1: Swit_3982
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Entry
Swit_3982 CDS
T00538
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Swit_3982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swi03400
]
Swit_3982
Enzymes [BR:
swi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Swit_3982
DNA repair and recombination proteins [BR:
swi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Swit_3982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABQ70327
UniProt:
A0A9J9HF17
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All DBs
Position
4371700..4374213
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AA seq
837 aa
AA seq
DB search
MARLDEYNRKRDFAKTREPAGTLETRGRHRFIVQKHDATRLHYDFRLEMDGVLKSWAVTR
GPSLDPDDKRLAVRTEDHPVSYGGFEGTIPEGEYGGGTVMLWDEGSWAPIAGKSERDLDK
GHLHFTLDGHRMKGEWLLVRIKGRPGEKRENWLLRKIDDGEAGGSDDLVAHALTSVKTGR
TMAQIAADKAGESSLKGKRGKAFDAIMAKSDAHNARVARRPAKGKPSTTPPPAFRKPQLA
TLVDHVPTGGAWIHEIKFDGYRALVAVAGDRVKIFTRTGLDWTDRFAPVAEAVAALGLPP
ALIDGEIVSLDGAGNPSFSALQKAIKGEGGGGGGFELFAFDLLSLDGDDLTGLGTVERKA
RLAGLLPRSHPMIHYADHVVGAGEKLFDAMCRAGQEGIISKRADARYRAGRTTNWLKTKC
TRRQEFVIIGWSRSDSAARPFRALLLAQQGEDGLVYAGKVGTGFDRATMEMLAEKFVARA
RKTPPADVPRAEARGTSWVRPDLVAEIGFAEFTDEGILRQASFIGLRSDKEAAEVTAEKP
MPVEEAARPEEAPVKISNPDRVIFPEAKATKGDLARYYQAVGPIILPWLAHRPVSLVRCP
QGRAKQCFFQKHDSGSFGEHVHHVPIREKDGKTEDYLYVDDVAGILACVQMGTIEFHGWG
SRVERIEMPDRMIFDLDPDVGLDFADVRTAAKDIRRLLSDIGLTSFAMLSGGKGVHVVVP
LRPEAEWPAVKDFAHRFAEAMAQAEPDRFVATMAKAKRVGRIFIDYLRNQRGATAVVPYG
ARARENAPVAAPVAWNELDDFDKAGAFTIKDADRLLKRASSKALKGWGVADQVLPDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcccggctcgacgaatataaccgcaagcgcgacttcgcgaagacgcgcgagccggcc
ggcaccctggagacgcgcggacgccaccgcttcatcgtccagaagcacgacgcgacccgg
ctgcactatgacttccggctggagatggacggcgtgctcaagagctgggcggtgacgcgc
ggccccagcctcgaccccgacgacaagcggctggcggtccgcaccgaggaccatccggtg
tcctatggcggtttcgaggggaccattcccgaaggcgaatatggcggcggcacggtgatg
ctgtgggacgagggcagctgggcgccgatcgcgggcaagagcgagcgcgacctcgacaag
ggccatctccacttcaccctcgacggccatcggatgaagggcgaatggctgctcgtccgg
atcaaggggcggccgggcgagaagcgcgagaactggctgctccgcaagatcgacgacggc
gaggcgggcggcagcgacgatctcgtcgcgcacgcgctgaccagcgtgaagaccgggcgg
accatggcccagatcgccgccgacaaggcgggcgaatcgagcctgaagggcaagcgcggc
aaggcgttcgacgcgatcatggcgaagtcggacgcgcacaacgcccgggtggcgcggcga
ccggccaaggggaaaccctcgaccacgccgccgccggccttccgcaagccgcagctcgcg
acgctggtcgatcatgtcccgaccggcggcgcctggatccacgagatcaagttcgacggc
tatcgcgccctggtcgcggtggccggggaccgggtgaagatattcacccgcaccggcctc
gactggaccgaccggttcgcgccggtggcggaggcggtcgccgcgctcggcctgccgccg
gcgctgatcgacggggagatcgtcagcctcgacggcgccggcaatcccagcttctccgca
ctgcaaaaggcgatcaagggtgaaggcggcgggggcggcggcttcgagctgttcgccttc
gacctgctctcgctcgacggcgacgacctcaccgggctcggcacggtcgagcgcaaggcg
cggctcgccggactgctgccccgcagccacccgatgatccactatgccgaccatgtcgtt
ggcgcgggcgagaagctgttcgacgcgatgtgccgcgccgggcaggaggggatcatctcg
aagcgcgccgacgcgcgctaccgcgccgggcggacgaccaactggctgaagaccaaatgc
acccggcggcaggagttcgtcatcatcggctggagccggagcgactccgccgcgcgtccc
ttccgcgcgctgctcctcgcgcaacagggcgaggacgggctggtctatgcgggcaaggtc
ggcaccggcttcgatcgcgcgacaatggagatgctggcggagaaattcgtcgcccgcgcc
cgcaagaccccgcccgccgacgttccccgcgccgaggcgcgcggcacgtcgtgggtccgg
cccgacctggtcgccgagatcggctttgccgagttcacggatgaggggatattgcggcag
gcgagcttcatcgggctgcgatccgacaaggaggccgccgaggtgacagcggagaagccc
atgcccgtcgaggaagccgcccggcccgaggaagcgccggtgaagatcagcaaccccgac
cgggtgatcttccccgaggcgaaggcgaccaagggcgatctcgcccgctattatcaggcg
gtcggtccgatcatcctgccctggctggcacaccgtccggtcagcctggtgcgctgcccg
caggggcgggcgaagcaatgcttcttccagaagcatgattcgggcagcttcggcgagcat
gtccaccacgtcccgatccgggagaaggacggcaagaccgaggattatctctatgtcgac
gacgtcgccggcatcctcgcctgcgtccagatggggacgatcgagttccatggctggggc
tcgcgggtcgagcggatcgagatgcccgaccggatgatcttcgatctcgatcccgatgtc
ggcctcgacttcgccgacgttcgcacggcggcgaaggacattcgccggctgctgtccgac
atcggcctgaccagcttcgcgatgctgtcgggcggcaagggcgtgcacgtcgtcgtgccg
ctgcgtcccgaggcggaatggccggcggtgaaggatttcgcgcaccgcttcgccgaggcg
atggcgcaggccgagcccgaccgcttcgtcgcgaccatggccaaggcgaagcgggtcggc
cgcatcttcatcgactatctgcgcaaccagcgcggcgcgaccgcggtggtcccctatggc
gcgcgggcgcgcgagaacgcgcccgtggcggcgccggtggcctggaacgagctcgacgat
ttcgacaaggcgggcgccttcacgatcaaggatgccgaccggctgctcaagcgggcgtcg
tcgaaggcgctcaagggctggggcgtggcggaccaggtgctgccggacctgtga
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