Syntrophomonas wolfei: Swol_0073
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Entry
Swol_0073 CDS
T00396
Name
(GenBank) Transcription-repair coupling factor - superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
swo
Syntrophomonas wolfei
Pathway
swo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
swo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Swol_0073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swo03400
]
Swol_0073
Enzymes [BR:
swo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Swol_0073
DNA repair and recombination proteins [BR:
swo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Swol_0073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABI67430
UniProt:
Q0B0S4
LinkDB
All DBs
Position
79300..82521
Genome browser
AA seq
1073 aa
AA seq
DB search
MLLQEKFWDSLCGVLQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLA
RDLEAFIEPGRLFMFLARDFYFAKENLSTLEVGRILSLQHCLDHPRQSAIIIATPGSFIY
PLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLG
HKEPCRVEFFGELIESIHRFDINSQRRLGKDEGQVKILPADELYGDELTCSIFSYLDESS
SVFFDEPREFYKQFKRSVRRYRESLKEACKDGKIIREIKLLDSEYLKKEIEAHSVIYHAY
FPSTIPQVAVTSLQHISQKEMEPFYRQYETLFARINDWQGKGLKVILAIKSRVAREQIQQ
DLLEQGITGISYLDKIVEKGFSSSTLQVALLSESDIWGKKTDPGSRKKHKHKGEERILLE
DLKLGDYVVHESYGIGIFRGVSQVENSGITREYILLEYAGTDRLYLPLEKLDLLFKYTSS
GDKEPRLNKLGGSAWERTRKKVAQSIQDLAEDLLQLYAHRESREGYAFSPDTPWQSQFED
EFPFRETPDQLKAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAIL
VPTTVLAEQHFQTFTERFAAYPAVIEVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLS
RDVKFKDLGLLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSV
IETPPPERYPITTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRVKEQLDELFPG
IKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQ
LYQLRGRVGRSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKIALRDLEIRGA
GNILGAEQHGYIQAVGFDLYCRLLEQETGRLKGEQVQENRVDPQLDIDIDYYIPESYIPD
SGSKMRIYRRLLLAGSQEEVEEIREEIRDRFGPLPQAVENFLQIAALRLLARDKEIKSLR
RKGRQIEIQTLQRLPGNLSEHLRGIRRVNDHTLIIQKHENSSLPALAEILQML
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
ttgcttttgcaagagaaattttgggattcactgtgtggagttttgcaaaagaggcaaaac
attttgttaaccggactttccggaagcgctaaagcctttatgctgagcgaaatacttaaa
aagcagaatcgaaaattactctgcctgttgccggaggaagagaaagcctacgacctggcc
cgtgatttggaagcatttattgagccggggcggctattcatgtttctggctcgtgatttt
tattttgcgaaggaaaacctgtccacgcttgaggtaggaagaattctaagcttgcagcac
tgcctggatcatccccgccaaagcgccattattatcgctacccccggttcttttatctac
ccattaccagctccctcagctatgagagagagcagcctcttgctgcaacagggaaaggaa
aaagaacagcgcgaaatactgaagaagctggtgggtggtggttaccgccgcgtggatacc
gtcagccggcaaggtgaatttgccgttcgtggcggcataatcgatattttccccctcggc
cacaaagagccctgccgggtagaattttttggggagcttatcgaatccatacatcgtttt
gatataaacagccagagaagattaggtaaagacgaaggacaagtgaagattttaccagcc
gatgaactttacggagatgaattgacttgcagcattttttcttacctggatgaaagcagc
agtgtattttttgacgagccccgggagttttataagcaatttaaacgcagtgttcgccgc
taccgggagtccttaaaagaggcctgcaaggatggcaaaattattcgagaaataaagctg
ctggatagtgaataccttaaaaaagaaatagaagcccatagtgtaatataccatgcttat
tttccctccactattccccaggtagcggtaacttcgctgcagcatatttcccagaaggaa
atggagcctttctaccggcagtatgaaaccctctttgcccggataaatgattggcagggt
aagggattaaaggttatattggcgataaaaagccgggtagcccgggagcagatacagcag
gatttgctggaacagggcatcaccgggatatcatatctcgacaagatagtggaaaagggt
tttagcagttccaccttgcaggtggcgctgctttcggaaagcgatatctgggggaaaaaa
accgaccccggcagcagaaaaaaacataaacacaagggagaagaaagaatacttctggaa
gacctcaagctcggagattatgtagttcacgagagctatggcatcggcatatttcgcgga
gtaagccaggtggaaaacagcgggattacccgggaatatattctcctggagtatgccgga
accgaccggctttacctccccttagaaaaactggatctcttatttaaatacaccagctcc
ggggataaggaaccccgtttaaacaaactggggggaagcgcctgggagagaacccggaag
aaggtagcacaatcaattcaggacctggcggaggatctcctgcagctctatgcccatcgg
gagagccgcgaaggctatgccttctcccctgacaccccctggcagagtcaatttgaggat
gagttcccttttcgtgaaactcccgaccagctcaaggctatcaatgaagtaaaaaaggac
atggaaacccggcggcccatggaccggctggtttgcggcgatgtgggctacggcaaaacc
gaagtcttcttgcgagcagccttcaaagccattatggacggtaagcaggtggccatatta
gttcctaccactgtactcgccgaacagcactttcagacatttacggaaagatttgccgca
tacccagcagtaatcgaggtgcttagccgttttcgcagcaactcggagcaaaagcgtatc
gttgaggatctgcaaaaaggggtggtggatatcgtaatcgctacccaccgcttgctttcc
cgcgatgtcaagttcaaagacctgggtcttctggtgatagatgaagaacatcgcttcgga
gtagcccaaaaggaaaaaatcaaggccttaaaagaactggttgatgtaataagcctttcc
gccacccccattccccgcagtctgcacatggcccttaccggcttgcgtgacctcagcgta
atagagactcctccccccgagcgttaccccattaccacctatgtcctcgaatataacgaa
gaaataatcgtggaggcggtaatgaaggaaatcgaacgccagggacaggtattcttcgta
cacaatcgtatcgaggatatctaccgggtaaaggaacagctggatgaactctttcccggc
ataaagatagcggtaggacacggccgtatgaaagaagatgaactctcccgggtaatgatg
gacttcgttaacggcaaataccagctctttctttgcactaccatcatagaatccggcctg
gatatgcccaatgtcaacaccataattgtggatgaagcggataaaatgggcttggctcag
ctctaccagctgcgggggagggtggggcgctcccatcgcctggcctatgcctatcttacc
taccgtcccgactgggtgataagtgaagcttcgcaaaaacgattgaatgctattcgggaa
ttcaatgaactgggctccggcatgaaaattgctttgcgggatttggaaatcagaggtgcc
ggcaacatcctgggagcagagcaacacggctatatccaggccgtgggctttgacctctat
tgccgcttgctggagcaggagaccggtcgcttaaagggcgagcaagttcaggaaaaccgg
gtagacccccagctggatatcgacatcgattattatattcccgaaagctatatacctgac
tccggcagcaagatgagaatatatcgccgtctcctgctggccggcagccaggaagaggta
gaggaaatccgggaagaaatccgggatcgtttcggccccctgccccaggcagtggagaac
ttcttgcaaatagccgcactgcgcctcctggcccgggacaaagagataaagtccctgcgc
cgcaaaggccggcagatagagatacagaccctgcagcgcctgcccggcaacctgtccgag
catctccggggcatcaggagagtcaatgaccacaccctgatcattcaaaaacatgaaaac
agctcactcccagccctggccgagattttgcaaatgttgtaa
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integrated database retrieval system
