Syntrophomonas wolfei: Swol_1124
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Entry
Swol_1124 CDS
T00396
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
swo
Syntrophomonas wolfei
Pathway
swo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
swo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Swol_1124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swo03400
]
Swol_1124
Enzymes [BR:
swo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Swol_1124
DNA repair and recombination proteins [BR:
swo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Swol_1124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABI68434
UniProt:
Q0AXX0
LinkDB
All DBs
Position
1300132..1301043
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AA seq
303 aa
AA seq
DB search
MGESATIAMAGREIKLTNLDRVLWPEDGYCKRDLVEYYTAIFPYMLPHLSERPLVFTRYP
RGIGEKSFYQKNAPEGLPQWIKTFTWAGSDGDSKNYVLVQQTVDLMWLANLACIEIHPWL
SQINSIEYPDFIVFDLDPSEQSTFEQVISVARLLHELMDSLSLRVYPKTSGAKGLHLYLP
IAEGFTYSQIRRVAQAMAEMVCQVIPDIATTERALKHRGPRVYLDYLQNGLGKTVCAAYS
VRPHKGAPCSTPIEWQELESIRPDQFTIKTLPERLQQVGDLFADVLNDRQDLKKAMATLG
VSR
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaatcagcaacgatagctatggcgggaagagagattaagcttactaatctggac
cgggttctttggccggaagacggctattgcaaaagagatttagtggaatactatactgcg
atttttccctatatgcttcctcatctaagcgagcgtccgctggtcttcacccgctatccg
cggggaattggagaaaaatcattttatcaaaaaaacgccccggaaggccttccgcagtgg
ataaaaacttttacctgggctggcagtgatggcgatagcaaaaactatgtcctggtgcag
caaacggtagatcttatgtggctggccaatctcgcctgcattgaaattcatccctggtta
tcgcaaatcaatagtattgaatatcccgattttatagtatttgacctggacccttcagag
cagagtacctttgagcaagttattagcgtggcccgcctgctgcatgaattaatggatagt
ctaagtctccgggtgtatcccaaaacttcaggggcaaaagggcttcacctttacctcccc
atagccgagggttttacctatagtcaaatacgccgtgtggcccaggcgatggcggagatg
gtttgccaggtgatccctgatatagctaccaccgaaagagctctaaaacatcgggggcct
cgggtttacctggattacctgcaaaacggcctgggtaaaactgtctgcgctgcttacagc
gttcgtcctcataagggggccccctgttccacccctattgagtggcaggaacttgagtcc
ataagaccggatcaatttacgattaaaaccttaccggagcgacttcagcaggtaggagat
ttattcgctgatgttctaaacgaccgccaggatctaaaaaaagccatggcaacattgggg
gtttccaggtaa
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