Shewanella piezotolerans: swp_0677
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Entry
swp_0677 CDS
T00791
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
swp
Shewanella piezotolerans
Pathway
swp02020
Two-component system
swp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
swp_0677
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
swp_0677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swp03021
]
swp_0677
Transcription machinery [BR:
swp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
swp_0677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ACJ27495
UniProt:
B8CIL9
LinkDB
All DBs
Position
complement(681675..683144)
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AA seq
489 aa
AA seq
DB search
MTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQSDSEPVSNEDRTTSESDSYSE
SDSDNDYSASAEVDPQQDSAAVETSDALTQDSMPDDLPMDTTWDEVYTVSSNASSGGMRD
DDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQNCEDILEAMGD
PEIEVDEVEAVLKRVQHFDPIGVAARDLSECLLIQLAQYAATTPHIDHARLLIKDYLDLI
AGRDFRQLMRKTKLKEDELREAISLIQTLNPRPGLAVTRSKDEYVIPDVSVAKKKGRWVV
ELNPDYMPKINVNQHYASMARSTKSQADGQFIRGHLQEAKWFIKSLESRNETLLKVSNCI
VKFQQGFFEYGDEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHV
GTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKYREAMLI
PPSNQRKSL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgactccacagttacagcaggcaatccgcttactgcaactgtcctctttagagctgcag
caagagatccagcaagcattagagtcaaatcccctactagaattagatgaagagcaatct
gacagtgaacctgtcagcaatgaagatcgcaccaccagcgaatccgatagctattcagaa
tccgatagtgacaacgattacagcgccagcgccgaagttgatccccagcaagatagcgct
gcagtagaaacctctgatgcattaacccaagattcaatgccagatgatctgccgatggat
accacttgggacgaagtctataccgtttcttcaaatgcaagctctggcggtatgcgcgat
gacgatatgccattccaaggtgaaaccagcgaaggcttatatgagcaccttgagtggcaa
aagaacttaacaccattttccgataacgatcttgctatcgccaccgccattattgatgct
attgatgaacgtggttacctcactcaaaactgcgaagatattcttgaggcaatgggcgac
cctgaaattgaggttgatgaagtcgaagccgtactcaagcgcgtgcagcattttgacccc
attggcgttgccgctcgcgacttaagcgagtgtctattgatccaactggcccaatatgcc
gctaccacaccgcatattgaccatgcccgcctactcatcaaagactacttagatttgatt
gcaggacgcgactttagacagttaatgcgtaaaactaagcttaaagaagatgaactacgt
gaagccattagcctgatccaaactctcaacccaagaccagggttagcagtcactcgcagc
aaagatgaatacgttattcccgatgtatcagtggccaaaaagaaaggtcgctgggtggtt
gagctaaacccagattacatgcctaaaattaatgttaatcagcactatgcttcaatggct
cgcagcactaaaagccaagccgatggccagttcatccgtggtcatttgcaggaagctaag
tggtttattaaaagtttagaaagccgtaatgaaactttactaaaggtcagtaactgcatt
gtaaaattccagcaaggcttctttgagtatggcgatgaagccatgaaaccaatggttttg
aatgatatcgcagaagccgttgagatgcatgaatccaccatatcaagggttaccactcaa
aagtatatgcatacccccagaggtattttcgaattaaagtatttcttctctagtcatgtc
ggaaccgacgacggtggagagtgctcatcaacagctattagagcgtttattaagaagtta
gtcgcagctgaaaaccaaaagaaaccattaagcgatagcaaaatggcgcaacttttggca
gaacaagggataaaagttgctcgtcgtactatcgcgaaatatcgtgaagcaatgctgatc
ccgccctcaaaccaacgtaagagtttataa
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integrated database retrieval system
