Sutterella wadsworthensis: I6J16_02065
Help
Entry
I6J16_02065 CDS
T07195
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sws
Sutterella wadsworthensis
Pathway
sws03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6J16_02065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sws03400
]
I6J16_02065 (mfd)
Enzymes [BR:
sws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J16_02065 (mfd)
DNA repair and recombination proteins [BR:
sws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6J16_02065 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QQS90232
LinkDB
All DBs
Position
complement(465511..469095)
Genome browser
AA seq
1194 aa
AA seq
DB search
MTSLGPIFADDLARVKPGDRLRLTISAQTSDAAALAQAALEARARGERVLVVCADPADVP
RLAQEMPWFEPKLDVRPLPDWETLPYDVLSPQEELVSERLEALYRLTAPTGGADVLLTSA
VTASQRLSPVSYIGANTFFFHQGEQISLTTLQKRLAAAGYANVKQVLAAGEFAVRGSIVD
VFPMGSERPFRLDFFDDEIESIRWFDVDTQRSMESAEEIRLLPGHEFPVDPEALLAFRQR
WRREFAGDPKKSIVYCDIEKEILPPGIEYYLPLFFDETAALTDYLPPNARVFLLGDIEAA
LQAFGRDMASRYKVLAADPQRPALAPERIWLKPEEFFKSLANFARFTVEKKENAEDLKRL
SGIEVDRKSQNPVGKLLERTRESAMKGVRTLIAAPSAGRMETMSQLLRTGGLSVEEFPDW
QTFLDADSALGIAAAPLFSGAVFHHPEIVILSEAELYAASPRRHRLRRVKHATTLEMMVR
DVAELKPGDAVVHADHGIGRYQGLVHMETPDGDAEFLEITYKNDAKLFVPITNLQLISRY
AGADPEHAPLHQLGRGDWEKAKRKAAQEVRDTAAELLNLYAIRRTREGIRFKIDPADYQA
FREGFAFDETPDQSTAINAVVDDMTSGKSMDRLVCGDVGFGKTEVALRAAFIAAMSGRQV
AVLCPTTLLAEQHAATFRDRFRAWPVTVAELSRFRTGKESAKVLAGLADGTVDIVIGTHK
LLSDKAQFKNLGLVVIDEEHRFGVRQKEVLRKIRAEVDVLTLTATPIPRTLSMSLEGIRD
FSVIATAPERRLAVKTFVTSEQDGTIREAVLRELKRGGQVYYLHNEVNTIENARARLETL
VPEARIAVAHGQMRERELEHVMRDFYQQRFNVLLCSTIIETGIDVPSANTIIIERADKFG
LAQLHQLRGRVGRSHHQAYAYLLTPPDGAFTKDAQKRLDAIQALEDLGSGFYLAMHDLEI
RGAGEVLGEHQSGEIAEVGYDLYNRMLMQAVKALKRGETPQAGDPLQLSTDINLHAPALL
PSAYVPDVSQRLAFYKAFASAEDRAALEKSTEALVDCYGKLPDAARRLIEVHKLRLKCEA
IGIRRIDAAPAAIIIAFTPKPNLDPLALVKLLQSRRDAQMLGPERLKLNVANPDPEKRLQ
TVYDVLAKLALPSEPLPPAPSATTAPGTSSMSLRKPKGGKSAPAASRSAKPPRR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacttccctcggcccgatctttgccgacgaccttgcccgcgtaaagccgggtgatcgg
cttcgccttacgatttccgctcaaaccagcgatgctgccgccttggctcaggctgcgctg
gaagcacgtgctcgaggcgaacgggtactggtggtctgcgccgacccggccgacgtgccg
cgtctcgcgcaggagatgccgtggtttgagccgaagctggatgttcggccgctgccggat
tgggaaacgctcccctacgacgtcctttcgccgcaggaagaattagtctctgagcgcctt
gaagccctttatcggctgaccgcgccgacggggggcgctgacgtgctgctcacctctgcc
gtgaccgcttctcagcggctttcacccgtttcttatatcggcgccaatacgtttttcttt
catcagggcgaacaaatctccttgacgacactgcaaaagcgccttgccgccgcgggctac
gccaatgtgaagcaagtgctcgccgccggtgaatttgccgttcgcggcagcatcgttgac
gtcttccccatggggtctgaacgtcccttccggctggatttctttgatgacgaaatcgaa
tccatccgttggttcgatgtggatacgcagcgctcaatggagtctgccgaggaaatccgg
ctccttcccggccatgaattcccggttgacccggaggcgctcctcgccttccgtcagcgc
tggcgcagagagtttgcgggcgacccgaaaaagagcattgtttactgcgacattgaaaag
gaaattctcccgccggggatcgaatactatctcccgctcttttttgacgaaacggctgcg
ctcacggactatcttcctcctaatgcacgggtctttctcttgggcgacattgaagctgcg
ctgcaggcattcgggcgcgacatggcctcgcgctacaaagtgctcgcggccgatccgcag
cgtccggcgcttgcgcccgagcgcatttggcttaaacccgaagaattcttcaagtcgctc
gcgaactttgcgcgcttcacggtcgagaaaaaagagaacgcagaggatctcaaacgcttg
agcggcattgaagttgaccgcaagagccagaatccggtcgggaagctcttggagcgtacg
cgcgaatcggcaatgaagggagtgcgcacattgatcgctgccccctccgccggccgtatg
gagaccatgtctcagctcctgcgcacgggcggcctgagcgtagaagaattccccgattgg
cagaccttcctcgatgccgattcagcgctcggcatcgccgccgcgccgctcttttccggc
gccgttttccatcatccggaaatcgttattctctcggaagcagagctttatgccgccagt
ccccgccgccatcgtctgcgccgcgtgaagcacgcgacaacgctcgagatgatggtgcgc
gacgtcgccgaactcaagcccggcgacgccgttgtccatgccgaccacggcatcgggcgc
tatcaaggcctcgtgcatatggagacgccggacggcgacgcggaatttttagagatcacc
tataagaacgacgccaagcttttcgtgcccattaccaatctgcagctcatctcgcgctat
gccggcgctgatccggagcatgcgccgctccatcaattgggacgcggcgattgggaaaag
gccaagcgcaaggccgcgcaggaagttcgcgatacggcagccgaactcttaaatctgtat
gccattcgccgcacgcgcgaaggcatccgcttcaagatcgatccggcagactatcaagcc
tttcgcgaaggcttcgcttttgatgaaacccccgatcagtccacggccatcaatgcggtg
gtcgacgacatgacttccgggaagtcgatggaccggctggtctgcggcgatgtgggtttt
ggcaaaacagaagtggcgcttcgcgccgccttcatcgccgccatgtcagggcgtcaggtg
gcggttctctgtccgaccacccttttggccgagcagcacgccgccacgttccgcgaccgc
ttccgcgcctggccggtgacggttgctgaactctcacgctttcgcaccggaaaagaatca
gccaaagtactcgcgggcttggctgacggcacggtcgacatcgtgatcggcacgcataaa
cttctttccgacaaagcgcagttcaaaaatctggggctcgtcgtcattgatgaagagcac
cgcttcggcgtgcgccaaaaggaagtgctccgcaaaatccgcgctgaagtcgatgtgctc
acgcttacggcgacgccgattccccgcacgctgtcgatgagtcttgaaggcatccgcgac
ttctccgtcattgccaccgctcccgaacgccgccttgctgtgaagacctttgtgacgagc
gaacaggacggaacgatccgtgaagcagtgcttcgcgaattaaagcgcggcggacaggtc
tactacctgcataacgaagtgaacaccatcgaaaacgcccgcgctcggctcgaaacgctt
gtgcccgaagcccgcattgccgttgcccacgggcaaatgcgcgaacgcgagcttgagcac
gtgatgcgcgacttctaccagcagcgctttaacgtgctcttatgctccacgattattgaa
accggcattgatgtgccgtcggccaatacgatcatcattgagcgtgccgacaaattcggt
ctcgcgcagctccatcagctgcgcggccgtgtcggccgatcgcaccatcaggcgtatgcc
tatctgctcacgccgcccgacggggcctttacgaaggatgcccagaagcgtctcgatgcc
attcaggcccttgaagatttgggttcaggtttttacctcgccatgcacgacttggaaatc
cgcggcgccggcgaggtgctcggcgaacatcaaagcggcgaaatcgccgaggtgggctac
gacctctataaccgcatgctcatgcaggccgtgaaggccttaaagcgcggtgaaacgccg
caggcgggcgatccgctgcagctctcgacggatatcaatcttcacgccccggcgctactc
ccctcggcctatgtgccggacgtttcgcagcgcctggccttttacaaagcctttgcttcg
gcagaagaccgcgcggcccttgaaaaatccaccgaagcgctcgtcgactgctacgggaaa
cttcctgacgccgcccgacgcctcattgaagtgcataaactgcgcctcaagtgtgaagcg
atcggcatccgccgtattgatgccgctcccgcggcgatcattattgcctttacgccaaag
cccaacctcgatccgctcgccctcgtgaagctcctgcagtcgcggcgcgacgcgcagatg
cttgggcccgagcgcctcaaacttaatgtcgccaaccccgaccccgagaaacgcctgcag
acggtctatgacgtgctcgccaaactggccctgccgtcggaaccgcttccgcccgcccca
tctgccacgaccgctcccggcacctcgtcgatgagtctcaggaagcccaaaggcggcaaa
tctgcgcctgccgcgtctcgttccgctaagccccctcgccgctga
DBGET
integrated database retrieval system
