Streptomyces xiamenensis: SXIM_18990
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Entry
SXIM_18990 CDS
T03904
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sxi
Streptomyces xiamenensis
Pathway
sxi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SXIM_18990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxi03400
]
SXIM_18990
Enzymes [BR:
sxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SXIM_18990
DNA repair and recombination proteins [BR:
sxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SXIM_18990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKG43283
UniProt:
A0A0F7FSJ9
LinkDB
All DBs
Position
complement(2069145..2072687)
Genome browser
AA seq
1180 aa
AA seq
DB search
MSLHGLLDAVVEDPALAEAVTAARAGTRRQVDLVGPPAARALSVAALARGAGRTVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPSWETLPHERLSPRADTVGRRLAVLRRLAHPSADDP
GAGPVSVVVAPIRSVLQPQVAGLGDLEPVSLRGGQSVQLERVTAALAAAAYQRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVELWGDEIEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDAVRERAAVLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGAMAV
VCDPERVRTRAADLVATSQEFLMASWAASAGGGDAPIDVGAASLRGIAEVREHAAELGMP
WWTVSPFSADATAEDDSVRLGLRAAESYRGDTARALADTKGWLADGWRVVYLTEGQGPAS
RTAEVLSGEGIAARLAARGLPGEIAPALVHVACGAIEHGFTDPALRLAVLTETDLTGQKA
AGRDGARMPARRRKTLDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPA
KRGQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLY
SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLTTIGEVKEDMEKSVPMDRLICGDVGY
GKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHFGTFSERYAQFPVAVRALSRFQSESDS
KAVLEGLREGSVDVVIGTHRLFSSEVKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVL
TMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAALRRELLREGQV
FYIHNRVESIDRAAARLRAIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVE
SGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPERPLTETAHERLAT
IAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRATLEA
GGGEPEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAATTEEDIAAVREELTDRY
GPLPEPVENLLLVAGLRMLARSCGVGDITLQGNKIRFSPVELRESQELRLTRVYPGSVVK
RAAGQVLVPRPATARVGGKPLTGRQLLAWTGEFLTTIPGS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggcctgctcgatgccgtcgtcgaagatcccgccctcgccgaggcggtc
accgccgcgcgcgccggcacgcgccggcaggtggatctcgtcgggccacccgccgcccgg
gcgctgtccgtcgccgccctggcgcgcggtgccggacgtaccgtgctggccgtcaccgcc
accgggcgggaggccgaggacctggccgccgcgctgcgctcgctgctgcccccggacggc
gtcgtcgagtacccgtcctgggagacgctgccgcacgagcggctctcgccgcgcgccgac
accgtcggccgccggctcgccgtcctgcgccgcctggctcacccgagcgcggacgacccg
ggcgccggtcccgtctccgtcgtggtcgcgccgatccgctccgtgctccagccgcaggtg
gccgggctcggtgacctggagccggtcagcctgcggggcgggcagagcgtccagctggag
cgggtgaccgccgcgctcgccgccgccgcgtaccagcgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgatgtcttcccgcccaccgaggagcacccg
ctgcgggtggagctgtggggcgacgagatcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggagatcgccgagcacggcctgtgggcgccgccgtgccgtgagctgctg
ctgaccgacgccgtacgggagcgggccgccgtgctcgccgaggagcatccggagctgggt
gaactgctcggcaagatcgccgagggcatcgcggtggagggtatggagtccctcgccccg
gtcctggtcgatgacatggagctgctgctggacgtcctgcccgccggggcgatggccgtg
gtgtgcgacccggagcgggtccgcacccgggcggccgacctggtcgccaccagccaggag
ttcctgatggcctcctgggcggcgagcgccggcggcggggacgcgcccatcgatgtcggc
gccgcctcgctgcgcggcatcgccgaggtgcgcgagcacgccgccgagctgggcatgccg
tggtggacggtcagcccgttcagcgcggacgccaccgccgaggacgacagcgtccggctg
gggctgcgggccgccgagtcctaccggggcgacaccgcgcgggcgctcgccgacaccaag
ggctggctggcggacggctggcgcgtcgtctacctcaccgagggccagggcccggcctcc
cgcaccgccgaggtgctgtcgggcgagggcatcgcggcccggctggcggccaggggcctg
ccgggcgagatcgcgcccgcgctggtccatgtggcctgcggcgcgatcgagcacggcttc
accgatccggcgctgcgcctggcggttctcaccgagaccgacctcaccgggcagaaggcg
gccggccgcgacggcgcccggatgccggcccgccgccgcaagacgctggacccgctgacc
ctggaggccggcgactacatcgtccacgagcagcacggggtgggccgctacatcgagatg
gtgcagcgcaccgtgcagggcgcgacccgcgagtacctgctggtggagtacgccccggcc
aagcgcggccagcccggcgaccggctgttcgtccccaccgaccagctggagcaggtcacc
aagtacgtgggcggtgaggcgccgaccctgcaccggctgggcggcgcggactggaccaag
accaaggcgcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtac
tcggcgcggatggcggcccccgggcacgccttcggcccggacaccccctggcagcgggag
ctggaggacgccttcccctacgccgagactcccgatcagctcaccacgatcggggaggtc
aaggaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcgggtac
ggcaagaccgagatcgcggtgcgcgccgcgttcaaggcggtgcaggagggcaagcaggtg
gcggtgctggtgcccaccaccctcctcgtgcagcagcacttcggcacgttctccgagcgg
tacgcgcagttcccggtggcggtgcgggcgctctcccgcttccagtcggagtccgactcc
aaggcggtgctcgaagggctgcgcgaggggtcggtggacgtggtgatcggcacccaccgg
ctgttctcctcggaggtgaagttcaaggacctcggtctggtgatcgtggacgaggagcag
cggttcggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtggacgtgctg
acgatgtcggcgacgccgatcccgcgcactctggagatggcggtgaccggcatccgggag
atgtcgacgatcaccacgccgccggaggagcggcacccggtgctgacgttcgtcggcccg
tacgaggagaagcagatcggggcggcgctgcggcgtgagctgctgcgcgagggccaggtc
ttctacatccacaaccgggtggagtccatcgaccgggcggcggcgcggctgcgcgcgatc
gtgccggaggcgcggatcgccacggcgcacgggcagatgagcgagtcggcgctggagcag
gtggtggtggacttctgggagaagaagttcgacgtgctggtctcgacgacgatcgtggag
tccggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaccttcggg
ctctcgcagctgcaccagctgcgcggccgggtgggccggggccgcgagcgcggctacgcg
tacttcctctacccgccggagcgtccgctgacggagaccgcgcacgagcggctggcgacg
atcgcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatc
cggggcgcgggcaatctgctgggcggggagcagtccgggcacatcgccggggtgggcttc
gatctgtatgtgcggatggtcggcgaggcggtggcggactaccgggcgacgctggaggcc
ggtggcggcgagccggaggaggcgccgctggaggtgaagatcgagctgccggtggacgcc
catgtgccgcacgactacgcgccgggtgagcggctgcggctccaggcgtaccgctcgatc
gcggcggcgacgacggaggaggacatcgcggcggtgcgcgaggagctgaccgaccgctac
ggtccgctgcccgagccggtggagaacctgctgctggtggcggggctgcggatgctggcg
cggtcctgcggggtgggggacatcacgctccagggcaacaagatccgcttctcgccggtg
gagctgcgcgagtcgcaggagctgcggctgacccgggtgtacccggggtccgtggtgaag
cgggcggcggggcaggtgctggtgccgcgccccgcgacggcgagggtcggcgggaagccg
ctgacggggcggcagctgctggcgtggacgggcgagttcctgacgacgatcccggggtcc
tga
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