Streptomyces xanthii: IAG42_20785
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Entry
IAG42_20785 CDS
T07861
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sxn
Streptomyces xanthii
Pathway
sxn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IAG42_20785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxn03400
]
IAG42_20785 (mfd)
Enzymes [BR:
sxn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IAG42_20785 (mfd)
DNA repair and recombination proteins [BR:
sxn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IAG42_20785 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNS05781
UniProt:
A0A7H1BAM6
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All DBs
Position
4572296..4575829
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAVKAAGDGNRMHVDLVGPPASRPFAVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPSTDDP
ETGPVSVVVAPIRSVLQPQVKGLGDLEPVALRTGQSADLNATVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTADVRARAAELAEQHPELGELLGKIAEGIAVEGMESLAPVLVEDMELLIDVLPEDAMAV
VCDPERVRTRAADLVATSQEFLQASWAASATGGDAPIDVGAASLRSIADVRDRARELGMM
WWSVSPFAADASAAGADTLQLGLHAPETYRGDTAKALADTKGWLSDGWRTVFVTEAHGPA
TRTVEVLGGEGVPARLDKDLTALAPSVVQVACGSLEYGFVHPELKVAVLTETDLTGQRAA
GKDGQRMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAK
RGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVKALSRFQTETESK
ATMEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEDDVRQVREELTDRYGKL
PEPVENLLLVAGLRMLSRACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAT
HQILVPRPKTAKVGGKPLVGRELLAWVGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgatgccgtcgtcaaggacgcggccctcgccgaagcggtg
aaggccgccggtgacggcaaccgcatgcacgtcgacctcgtgggcccgcccgcgtcccgc
cccttcgcggtggccgcgctggcccgcgaggcggggcgccccgtcctcgccgtgaccgcc
accggccgcgaggccgaggacctcgcggccgcgctgcgctcgctgctgccgcccgacacg
gtcgccgagtacccgtcctgggagacgctgccgcacgagcggctcagcccgcgcagcgac
accgtcggccggcgcctggccgtgctgcgccggctcacccacccgagcaccgacgacccc
gagaccgggccggtctccgtcgtcgtcgcccccatccgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtcgccctacgcaccggacagagcgccgacctgaac
gccacggtcgaggcgctcgccgccgccgcgtacgcccgcgtcgaactcgtcgagaagcgt
ggcgagttcgcggtccgcggcggcatcctcgacgtgttcccgccgaccgaggagcacccg
ctccgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggccccgccctgccgcgaactgctg
ctcaccgccgacgtacgggcccgggccgccgaactcgccgagcagcacccggagctgggc
gaactcctcgggaagatcgccgagggcatcgccgtcgagggcatggagtccctcgccccc
gtcctcgtcgaggacatggagctgctgatcgacgtcctgcccgaggacgcgatggccgtc
gtctgcgaccccgagcgggtccgcacccgcgccgccgacctggtggcgacctcgcaggag
ttcctccaggcgtcctgggccgcgtccgcgaccggcggcgacgccccgatcgacgtgggc
gcggcctcgctgcgctccatcgccgacgtccgcgaccgggcccgtgagctcggcatgatg
tggtggtcggtgtcgccgttcgccgccgacgcctcggccgccggcgcggacacgctgcag
ctcggcctgcacgccccggagacgtaccgcggggacacggcgaaggcgctggccgacacc
aagggctggctctccgacggctggcgcaccgtgttcgtcaccgaggcgcacggccccgcg
acccgcaccgtcgaggtcctcggcggcgagggcgtcccggcccgcctcgacaaggacctc
accgcgctcgcgccgtccgtcgtccaggtggcctgcggcagcctcgagtacggcttcgtg
caccccgaactgaaggtcgccgtcctcaccgagaccgacctgaccgggcagcgcgccgcg
ggcaaggacggccagcggatgccggcccggcgccgcaagaccatcgacccgctcaccctc
gagtccggcgactacatcgtgcacgagcagcacggcgtcggccgctacatcgagatggtc
cagcgcacggtgcagggcgcgacccgcgagtacctcgtcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccgcctctacatcccgaccgaccagctggagcagatcaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggcggcgccgactggacgaagacg
aaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctcatcaagctgtactcg
gcccgcatggcggcccccggccacgccttcggggcggacacgccgtggcagcgggagctg
gaggacgcgttcccgtacgcggagacgcccgaccagctgaccacgatcgccgaggtcaag
gacgacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgcgccgcgttcaaggcggtccaggacggcaagcaggtcgcc
gtcctcgtccccacgaccctcctcgtccagcagcacttcggcacgttctccgagcgctac
gcccagttccccgtgaacgtgaaggcgctcagccgcttccagaccgagaccgagtcgaag
gcgacgatggagggcctgcgcgaaggctccgtcgacgtcgtcatcggcacccaccgcctc
ttctcctccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgcgaacgtcgacgtcctgacg
atgtccgcgacgccgatcccccgcaccctggagatggcggtcaccggcatccgcgagatg
tccacgatcacgacgccgcccgaggagcgccacccggtcctcaccttcgtcggcccctac
gaggagaagcagatcggcgcggccgtgcgccgcgaactgctgcgcgagggccaggtcttc
tacattcacaaccgggtcgagtcgatcgaccgcgccgccgcccgcctgcgcgagatcgtg
cccgaggcgcgcatcgcgacggcccacggccagatgtccgaacaggccctggagcaggtc
gtcgtggacttctgggagaagaagttcgacgtcctcgtctcgacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacacgctcatcgtcgagcgcggcgacaacttcggcctc
tcccagctccaccagctgcgcggccgcgtcggccgaggccgcgaacgcggctacgcctac
ttcctctacccgccggagaagcccctcacggagaccgcccacgagcgcctcgccacgatc
gcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctgggcggcgagcagtccggccacatcgcgggcgtcggcttcgac
ctctacgtccgcatggtcggcgaggccgtcgccgactaccgcgcctcgctggagggcggc
gtcgaggaggagccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcacccggcgagcgtctgcgcctccaggcctaccgctcgatcgcctcggcg
aacacggaggacgacgtccgacaggtccgcgaggaactcaccgaccgctacggcaagctg
cccgagcccgtcgagaacctcctgctcgtcgccggcctgcgcatgctctcccgcgcctgc
ggcgtcggcgagatcgtcctccagggcaccaacatccgcttcgccccggtcgaactccgc
gagtcccaggaactccgcctcaagcgcctctaccccggcacggtcatcaaaccggccacc
caccagatcctggtcccgcgccccaagacggccaaggtcggcggcaagccgctggtcggg
cgcgaactgctcgcgtgggtgggggagttcctgacgacgatcctggggtcgtga
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