Sphingobium yanoikuyae: A6768_22625
Help
Entry
A6768_22625 CDS
T05170
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A6768_22625 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sya03400
]
A6768_22625 (ligD)
Enzymes [BR:
sya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6768_22625 (ligD)
DNA repair and recombination proteins [BR:
sya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6768_22625 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATI82521
UniProt:
A0A291N5H6
LinkDB
All DBs
Position
4890002..4892515
Genome browser
AA seq
837 aa
AA seq
DB search
MSRLHPLASYNAKRDFNRTSEPEGKMAKKGGNSFVVQKHAATRLHWDFRLEVDGVLKSWA
VTKGPSLDPDDKRLAVRTEDHPLSYGSFEGNIPKGEYGGGSVMLWDRGWWEPIPGKSAKD
IEDGHLHFILHGERMKGEWLLVRMKGRAGEKRENWLLRKIEDGEARRNGDLVERALTSVL
TDRSMAQIAGDIAGTQSLKGARGKTFTDRMQAANAHNAKIGRTKVKAIARTEAMPRFIKP
QLATLVDHVPVGNEWLHEIKYDGYRALVAVSGEAIKIYTRSGLDWTDKFGPLAAAIKALD
LPPALIDGEIIAFDADGNPSFSALQAVLKRGHGAERADTPFHFFAFDLLSLDGMDLKSLP
AIERKERLEALLADAEQPIHVADHLIGSGEKLYRSLCQAGQEGIIAKRVDAPYRSGRTRA
WVKVKCTRRQEFVIVGWTRSKVKGRAFSSLLLAQHEGGALVYKGKVGTGFDAATMTDLAE
AMSPIATGTSQIIISAAQARGVQWVKPKLVAEVGFAEFTREGLVRHGSFLGLRSDKLAKT
VKPEKAAPTPPSATAIRISNRARVIFPESGQTKGELADYYARIAPLMLPFAANRPISLVR
CPQGRAKKCFFQKHDSGAFGDHVRHVAIREKDGGSEDYLYVDDAEGLIACVQMGTIEFHG
WASRADAVEKPDRMIFDLDPDEGMDFARVREAAKDIRDHLRDIGLISFAMLSGGKGVHVV
VPLSPTHDWDAHKDFAARFAQALSAAEPDRFVATMSKAKRKDRIFIDWLRNQRGSTAILP
YSARARAGAPVAIPVDWDELNDLQDAHPYDIGDAEILGERAVKLKGWGFAAQTLPDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgagccggctccatccccttgcctcctataatgccaaacgggacttcaatcgcaccagc
gagcctgaaggcaagatggcaaagaaaggcggtaacagtttcgttgtccagaaacatgcc
gccacaaggctgcactgggacttccggttggaagtcgatggcgtgctcaagagctgggcc
gtcaccaaggggccgagcctggatcccgatgacaagcggcttgctgtccgcaccgaagat
catcctctgagctatggcagtttcgagggtaatattcccaagggcgaatatggcggcggc
agtgtgatgctctgggaccgcggttggtgggaaccgatcccgggaaagagcgcgaaggat
atagaggatggccatctccatttcatcctgcatggcgaacggatgaagggggaatggctg
ctggtgcggatgaaggggcgcgcgggcgaaaagcgcgagaattggctgctccgcaagatt
gaggatggcgaagcccgccggaatggcgatctggtcgagcgcgcgctgacaagtgttctg
actgaccgctcgatggcgcaaatcgccggggacatcgccggcacgcagtcattgaaaggc
gccaggggcaagacattcacggataggatgcaggcggcaaacgcgcataatgcaaagatc
ggcaggacgaaggtgaaggcgatcgccagaacggaggctatgccgcgcttcatcaagccg
cagcttgcaactttggtcgaccatgtaccggtcggcaacgaatggctgcacgagatcaaa
tatgacggatatcgcgcgctcgttgcagtcagtggcgaagcgataaaaatatatacgcgc
agcggcctggactggacggacaaatttggtcctttggctgcagccataaaagcgctcgac
ctcccgcctgcattgatcgacggcgagatcatcgcctttgacgctgacggcaatcccagt
ttttcggcgctgcaggcggtgttgaaacggggccatggcgcggagcgagccgacacgccg
ttccatttcttcgcttttgatcttctttcacttgacggcatggatttgaagtctctcccc
gcaatcgagcgaaaggagcggctcgaagccttattggcggatgcagaacaaccgatccac
gttgccgatcacctgatcggctcgggcgagaagctctaccgatcgctttgtcaggccggg
caggaaggcattatcgcaaagcgcgtcgatgcgccctatcgcagcggacggacacgcgcc
tgggtgaaggtcaaatgcactcgtcggcaggaattcgtgatcgtcggctggacccgtagc
aaggtaaaagggcgtgccttctcctccctgctactggcgcagcatgaaggcggtgcactg
gtctataagggcaaggtcggcactggtttcgatgccgccacaatgaccgacctggccgag
gccatgagtccgattgcgaccggcacgtcgcagatcatcatttccgccgcccaagcgcgc
ggcgtccaatgggtcaaacccaagctcgttgcggaagtcggttttgccgagttcacaagg
gagggtctcgtgcgacatggcagttttctggggctacgaagcgacaagttggcaaagacg
gtcaagcccgaaaaagcggccccaacgcctccttcggccacagccatcaggatcagcaat
cgcgcgcgcgtgattttcccggagagcgggcagaccaaaggggagttggccgattattac
gcgcggatcgccccgctgatgctacctttcgccgccaatcggccgatcagtcttgtgcga
tgcccccagggccgcgcgaagaaatgctttttccaaaaacatgacagcggcgcctttggc
gaccatgtccgccatgttgcgatccgcgagaaagacggcggctcggaagattatctctat
gtcgacgatgccgaaggcctgatcgcttgcgtccagatgggtacgattgaatttcatggc
tgggcgagccgtgccgatgccgtcgagaagcccgatcgcatgatcttcgatcttgatccc
gacgagggcatggattttgcacgggtgcgtgaagcggcaaaggatattcgcgatcatctg
cgcgacatcggtctgatctccttcgccatgctgtcgggagggaagggggtccatgtcgtc
gtccccctcagccccacccacgactgggacgcacataaggatttcgctgcccgtttcgcc
caggccttgagcgcggcagaacccgatcgctttgttgccacgatgagcaaggccaagcgc
aaggatcgcatattcatcgactggctgcgcaatcagcgcggcagcaccgccatccttccc
tactcggcgcgcgcgcgtgccggcgcgcctgtagccataccggtcgactgggacgaattg
aacgatttgcaggacgcccatccctacgacattggagatgccgaaatattgggggagcgc
gcagtgaagctcaaaggctggggcttcgctgcgcagaccctgcccgatctatga
DBGET
integrated database retrieval system