Synechococcus elongatus PCC6301: syc0227_c
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Entry
syc0227_c CDS
T00163
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syc
Synechococcus elongatus PCC6301
Pathway
syc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
syc0227_c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syc03400
]
syc0227_c
Enzymes [BR:
syc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
syc0227_c
DNA repair and recombination proteins [BR:
syc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
syc0227_c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
BAD78417
CyanoBase:
syc0227_c
UniProt:
A0A0H3K045
LinkDB
All DBs
Position
complement(260107..263568)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTFSALIRTLARSPLSQDLLTKLEKQSGLRLIGAGRLAQGLVTSALVQAQSRSLLVICAT
LEEAGRWAAQLEGMGWPTLHFYPTSESSPYEAFDPESELVWGQLQVLADLLEQSQPVAIV
ATERSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTVETEGQWSRRGD
IIDLFPVSAELPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTSYASVIAAALADR
SLDDWLTEAEQEAWQEGQPPEGMRRFLGVAFERSASLLDYLPAGTVIAIDEPLQCRAHSD
RWIEHVQDHWQEQAQVWPAIHRDFQAAWEEIRCFQRIELSQLNSSSDSELPVLDLAARSL
PVLPHQFGKLADFIRTERDRHSIWLVSAQPSRMVALLQEHDCPSQFIPNPRDYPAIDRLS
EKRVPIALKHSGLAELEGFSLPTFRLTLITDRECFGQHVLASPTYVRKRRRAASKQVDRD
RLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQYADGLLRVAADQMGSLSRYRGMG
GERPELSSMTSKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYPPDQPWQQELEES
FPYQPTADQLKAVEAVKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGKQVALLA
PTTILTQQHYHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTQQLLSK
GTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLI
TTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEGIEAIATRLQEMLPSL
RIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQL
YQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVG
NLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQVDDTQIDLSLTAFIPADYIPDID
AKMSAYRAVASAQTPADLLQIAADWSDRYGSLPASAQQLLRVMELKQVAKSLGFARTRTE
SKQHVILETPMEAPAWKRLHEKLPSNLQGRFVYAAGRVTVRGLGLQSADQQVENLITWLT
PLQGSLSEVAIAA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcagcactgattcgcaccttggcgcgatcgcccctcagccaagacctgctg
acgaagttagagaagcaatcgggcctgcggctgattggagccggtcgcttagcgcagggg
ttggtgacctcagcccttgtccaagcccagtcgcgatcgctactggtgatttgcgccacc
ctcgaagaagccggtcgctgggctgcgcagctggaaggcatgggctggccgacgctgcat
ttttacccgacctcagaatcctcgccctacgaagcctttgatcccgaatcagagctggtt
tgggggcagttgcaagtccttgccgatctgctggaacagagtcagccagtagcgatcgtg
gcgaccgagcgatcgctacaaccccatttgccgcctgtcgaagccttgcgccccttttgc
caaaccctgcagcgcggacaggaggtcaacctcggtgagctggccgatcgcttcgcgcag
tttggctacgagcgcgtcgataccgttgagacggaggggcagtggagtcggcgcggcgac
attatcgaccttttccccgtctcggccgagctgccggtgcggctggaattatttggcgat
gagctggagcgactacgggagtttgatcccgcaacccagcgatcgctcgatgaaattgag
gtcctacgcttaacccccaccagctacgcctcagtcatcgcagcggcgctcgccgatcgc
tccctcgatgactggctgacggaagcggaacaggaagcctggcaggaagggcagccaccg
gaaggaatgcgccgctttttgggcgtagcctttgagcgatcggcttccctgctggactat
ttaccagcgggcaccgtgatcgcgatcgatgaaccgttgcagtgtcgcgcccacagcgat
cgctggattgagcacgttcaggatcactggcaggaacaagcacaggtttggcccgccatc
caccgcgactttcaagctgcttgggaagaaatccgttgcttccagcgcattgaactttca
caactcaatagcagcagtgacagcgagttgccggtactggatttagcggcgcgatcgctc
cccgttctgccccaccaatttggcaagctggcggacttcattcggactgaacgcgatcgt
cacagcatttggctcgtctcagctcaaccctcgcggatggtggcgctgctgcaggagcac
gactgtccgtcgcaatttattccaaatccccgcgactatcccgcgatcgatcgcctcagt
gaaaagcgtgtcccgatcgccctcaagcattcggggttagcggagctagaaggtttcagt
ctgccgacgtttcggctgaccttaatcaccgatcgcgagtgctttggtcagcacgtcctc
gcctcaccaacctacgtgcgcaagcggcggcgggcggcctccaaacaagtcgatcgcgat
cgcctcaaacccggcgactacgtggtgcatcgcagtcacggcattgggcgcttcgtcaaa
ctagaaagcctcagcctcagtggcgaaatgcgcgagtatctggtactgcagtatgccgat
ggcctgctgcgggtggctgccgatcagatgggtagcctcagtcgctatcgcggtatgggc
ggtgaacgtcccgagctgagcagcatgactagcaaggcttgggagaaaaccaaggccaag
gcccgcaaagccgtccgtaaggtcgccgtcgatctgctcaagctctacgcccagcgatcg
cagcaagagggccacgcctacccaccggatcagccttggcagcaggagctggaagagtcc
tttccctaccaacccaccgccgatcaactcaaggctgtcgaagcagttaagcgcgatatg
gaaagtccgcaacccatggatcgcttggtctgcggcgacgttggttttggcaaaacagag
gtggccgttcgcgccatcttcaaggcggtgacggcgggtaaacaggttgctctattggcc
ccaaccacgattctgacccagcagcattaccacaccctcaaggaacgcttcgcaccctac
ccgattcagatcggtttgctcaaccgatttcggacggccagtgagcgccaaaacattcag
caacggctggcgactggcgaactggatgtggtggttggtacccaacagctactgagcaaa
ggtacgcaattccgtgatctcggcttgctagtcgtcgatgaagagcagcgctttggggtc
aaccagaaggaaaaaatcaaggcgctcaaaacccaagtcgatgtcctaaccctgagtgcc
acaccgattccccgcactttgtatatggcgctttccggcgtgcgggaaatgagtttgatc
accacgccgccgccttcccgtcgcccaattaagacgcacctgatgccctacgacttggag
gcagtgcgaacagcgatttcgcaagaaattgatcgcggtggccaggtcttttatgtcgtg
cctcgcgtggaggggattgaagcgatcgcgacgcggttgcaggaaatgctgccgagctta
cgcattgctgtcgcccacggtcagatgccggaaggcgaactagaggcaaccatgctggcc
ttcaacaacaacgaagctgatgtgatgatctgcaccacaatcatcgagtccggcttggat
attccccgcgtcaacacaatcttgattgaggacgcccagcgctttggcctgtcgcagctc
tatcagttgcgggggcgtgtcgggcgggctgggatccaagcccatgcgtggttgttctac
cctggcgagacggtgctgtccgatcaggcacggcagcgactgcgagcgattcaggagttc
acgcaactcggttccggctatcaacttgccatgcgcgacttggaaattcggggcgtcggt
aatctgctcggcgtggaacagtcgggacagatggaagcgatcggctttgacctctatatg
gagatgctgcaggaatccctccaagaaattcgcggtcaggatattccccaggtcgatgac
acccagatcgacctcagcctgacggccttcattccggctgattacatccccgacatcgat
gccaagatgagcgcctatcgcgctgtggcttcggcgcaaacaccggcagatctgctgcaa
attgctgcggattggagcgatcgctacggctcactgcccgcctcagcgcagcaactgctg
cgggtgatggaacttaaacaagtcgctaaatcccttggctttgcgcgcactcgaaccgag
tcgaaacagcacgtcattctggagacgccgatggaagcccccgcttggaagcggcttcac
gaaaagcttcctagcaatctgcaagggcgatttgtctatgcggctgggcgagtgacggta
cgaggtttgggactgcagagcgccgatcaacaggtggaaaatttgatcacctggctgact
cctctccaaggaagcttgtcagaagtcgcgatcgcagcctaa
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