Synechococcus sp. CC9605: Syncc9605_1300
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Entry
Syncc9605_1300 CDS
T00292
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syd
Synechococcus sp. CC9605
Pathway
syd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syncc9605_1300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syd03400
]
Syncc9605_1300
Enzymes [BR:
syd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syncc9605_1300
DNA repair and recombination proteins [BR:
syd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Syncc9605_1300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABB35054
CyanoBase:
Syncc9605_1300
LinkDB
All DBs
Position
complement(1212529..1216107)
Genome browser
AA seq
1192 aa
AA seq
DB search
MPLRSLVTKLQETALTGELDERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPT
LEEAGRWTALLELMGWSQAGLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDALSWA
IVATERCLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGSWSRR
GDIVDIFPVSSELPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPLIADQLR
ETMPDGLEPLLGAEGTEQLLNGGTPEGMRRLMGLAWGQPASLLDYLPDTTTVVIDERRQG
LAHGQQWLSHVEEHHHDMAAEAGLDEGDRDRLWPAVLHREIEAAYALTEVFHGFDMAELL
EVDQHPNSFDLASRPVAAYPNQFGKLGELIKGFQTERTAVWLVSAQPSRAVALLEEHDCI
SRFVPNAGDSNAISRLIEQNTPVALKVRGTAELEGLQLPAWRIALVTDREFFGQQSLSSS
GYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGIL
RVAADQLGSLGRYRATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAERQQAA
GFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAI
RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKSILDGL
KQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI
PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRV
EGIEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQL
GSGYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQV
DLPVTAFVPADWITDPDEKIAAYRAAADCLTAEALVELAAGWADRYGALPAAVVSLLQLM
ELKLLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGNGIQHKVM
ARGLGVLPMEKQLEQLMEWLRLMAAQIPDADGKTEAQRQEELRAKNAVVVQV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgccgctccgttccctggtgaccaagttgcaggaaactgcactcaccggtgagcttgat
gagcgctcaatccgcgcccaacgcttgttgatgcgtggagcaggtcggtgcagccgagct
ctggtggccagcgcacttgcacaacggcgcggtgcacctctgctcgtggtggtgccaacc
cttgaggaagcgggacgctggacggcgctgctggagttgatgggatggagccaggccggc
ctgtaccccaccagcgaaggttctccctatgaacccttcgatcccaccagtgagatcacc
tgggggcaacttcaagttctgagtgacctgctgggagacccggatgctttgagctgggcg
atcgtggccacggaacgttgtttgcagccccatctccccccaccggacgttctgaaaacg
aagacgcgcaccttgcgcaaaggggatcaggttgatctggaggcactgggtgagacgctc
gctcaacttggctacgagcgggtcaacacaattgagcaggaagggagctggagccgacgc
ggagacatcgtcgacatcttccccgtgagcagtgagctgcctgttcgactcgaatttttt
ggtgaggagctcgacaagctgcgggaattcgatccagccagccaacgctccctggacccc
gtcgatgcgctccgactcacaccaacaggttttgggcctctgatcgcggaccagctcagg
gagacgatgcccgatggactggagccattgcttggtgctgagggcacggagcagcttctg
aacggggggacaccggagggcatgcgccggctgatgggtctcgcctgggggcaacccgcc
tcgcttctcgactacctgccggacaccacaacggtggtgatcgatgagcgacgccagggc
ttggcccacggacaacagtggctcagccatgtggaggaacatcaccacgacatggctgct
gaggcgggcctggacgagggagatcgtgatcggctttggccagcggttctgcaccgtgag
attgaagctgcctatgccctgacggaggttttccatggctttgacatggcagaactgctg
gaagttgaccagcaccccaacagcttcgacctcgccagccgccctgttgcggcctacccc
aaccaattcggaaaactcggggaactgatcaagggatttcaaaccgagcgcacggccgtt
tggttggtgtctgcacaacccagccgagcggttgctctgctggaggagcacgactgcatc
agtcggtttgtgccgaacgcgggagacagcaatgccatttcccgtctgattgagcagaac
acccccgtcgcgttgaaggtgaggggcacggctgaacttgagggtttgcagcttccggct
tggcggattgccctggtcaccgaccgtgaattctttggccagcagagcctgagctccagt
ggttatgtgcgccgtcgccgcaaggccgccagccgcacggttgatcccaacaagatgcgg
ccgggcgatttcgtggtgcatcggaaccatggcatcggccgcttcaaagccatggaaaaa
ctcgcgatgtcaggcgacatccgcgactacctcgtggtgcagtacgccgatggaatcctt
cgggttgccgccgatcaactcggcagcctgggccgttaccgcgccacgagcgaaacacct
ccgcagctcaaccgaatgggcggtacggcctggaacaaggccaaggaacgtgccaagaaa
gcggttcgcaaggttgcccttgatctggtgaagctgtacgcggaacggcaacaggctgct
ggctttgccttccccactgacggcccctggcaggtggaaatggaggagtctttcccctat
gacccgacgccagaccaactgaaggccacggccgacgtgaaacgggacatggaacggcag
gagccgatggaccgtctggtttgcggggacgttggcttcggcaagaccgaagttgcgatc
cgcgccatctttaaggccatcaccgctgggaagcaggtggcgatgctggctcctacaacc
gtgttggctcagcagcactggcgcacgctctcggaacgcttcgcgccgtatccgatcaag
gtggccctgctcaatcggttccgaacagcgtcggaacgcaaatccattctcgatggcctg
aagcagggaaccatcgacgccgtggtgggaacccaccagttgctcagcaaaggagcgtca
ttccaagagcttggtctgttggtggtggatgaagaacagcgcttcggtgtgaaccagaag
gaaaagatcaaagtgctgcggaaggacgtggacgtcctaaccctgtcggcaacgccgatt
cccagaacgctctacatgagcctttcgggggtgcgggagatgagtctgatcaccacacca
ccgccgctgcgccgtccgatcaagacgcacctggcttcgttggatccggaggcgatgcgg
agcgccatccgccaggaactggatcgtgggggtcaggtgttctacgtggttccccgggtt
gagggaattgaggaggtggccgcaggcctacgggagatgctgccaggcctgaagcttttg
gtggctcacggtcagatggccgagggtgagctggagaacgccatggtggcgttcaacgcg
ggtgaagccgacgtgatgctctgcaccacgattgtggaaagcggcctggacatcccgcgc
gtcaacacgatcctgattgaggacgcccaccgttttggccttgctcagctgtaccaattg
cggggacgggtcggccgcagcgggattcaggctcatgcctggttgttctatcccggcaat
gcatcactgagcgacaccgcccgtcagcggctccgcgccatccaggagttcgcccaactg
ggcagtggttatcagctcgccatgcgggatatggagatccgtggggtcggcaatcttctc
ggcgtgcagcagagcggccagatggaaaccattggctttgacctctacatggaaatgctg
caggaatccctggctgaaattcagggccaagacatccccagcgttgaagacacccaggtg
gacctccccgtcacggccttcgtgcctgccgactggatcactgaccccgatgaaaagatc
gcggcctacagagctgcagccgactgcctcacggccgaggccctggtggaactggctgcg
ggttgggccgatcgctacggagcgctgcccgctgccgtggtgtcacttctgcagctgatg
gaactcaaacttctggcgaagcggtgcggcttctccaggatcaagccggagaagcccaac
atcgtgcttgaaactcccatggaggaaccggcgttccgtttgctgcgccagggattgccc
cagcatctgcatggccgtttggtgtaccaggccggtaacggcatccagcacaaggtgatg
gcccgcggtctcggtgttctccccatggagaagcaactggaacaactgatggaatggctg
cgtctgatggcagcccaaattcccgacgccgacggcaaaaccgaggcacagcggcaggag
gagcttcgcgccaagaacgcagtggtggttcaggtctga
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