Synechococcus sp. CC9902: Syncc9902_1176
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Entry
Syncc9902_1176 CDS
T00293
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syncc9902_1176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_1176
Enzymes [BR:
sye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syncc9902_1176
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Syncc9902_1176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABB26140
CyanoBase:
Syncc9902_1176
UniProt:
Q3AXP6
LinkDB
All DBs
Position
1140587..1144165
Genome browser
AA seq
1192 aa
AA seq
DB search
MPLRSLVRQLRDGALTGELLERSRRSERLLMRGAGRNCRALIASAMAQRDGSPLLVVVPT
LEEAGRWTALLELMGWSLASLYPTSEGSPYEPFDPTSEIIWGQLQVLSDLLNDPESSGRA
IVATERCLQPHLPPPDALKATCRVLTRGDEVELESLAETLAKLGYERVSTIDQEGTWSRR
GDIVDIFSVSSELPVRLEFFGEELVKLREFDPSTQRSLDPIDQLRLTPTGFNPLIADQLR
ATMPDGLSSLLGEQATDELLEGGTPEGMRRLMGLAWNEPASLLDYLPDVTTVVIDERRQG
LAHGQLWLDHAIEHHKEMAIEVGLSEQDRDLLWPGVLHRDVVAAYGLAEVFDGFDLAELL
EEDNHPNSFDFASRPVPAYPNQFGKLGELIKGFQRDRMSVWLISAQPSRAVALLEEHDCI
SRFIPNAGDLPAIERLIEQNTPVALKAKGNAELEGVLLPAWRVALVTDREFFGQQTLTST
GYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMDKLALSGDVRDYLVVQYADGIL
RVAADQLGSLGRYRATSESPPQLSRMGGAAWTKAKDRAKKAVRKVALDLVKLYAERQQSN
GFAFPPDGPWQTELEESFPYEPTPDQLKSTTDVKRDMERAEPMDRLVCGDVGFGKTEVAI
RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTTTERKSILEGL
KQGTIDAVVGTHQLLSKSTSFQQLGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI
PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRV
EGIEDVANGLRTMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDNARQRLRAIQEFAQL
GSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVDDTQV
DLPVTAFVPADWITDPDEKIAAYRAAADCTSSEALVELAAGWADRFGAIPAAVQSLLQLM
ELKMLAKRCGFSRIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRFVYQPGSGLQHKAL
ARGLGVLPMEKQLEQLMDWLKLMAAQIPDTDGLTADQRDRQKAEKNDSVIRV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttcgttccctggtgcgtcagctgagggacggggcgctaacgggcgaattgtta
gagcgcagccgacgatcagaacggctcttgatgcggggtgcaggtcgtaattgccgcgca
ctcatcgccagcgctatggcgcaacgcgatggatctcccttgcttgtagtggttccaact
ctggaagaagccgggcgttggacagctctgctcgagctaatgggctggtcactcgccagt
ctttacccaacaagtgaagggtctccctatgagccatttgaccccactagtgaaattatc
tggggccagttacaggttctcagcgacctcctgaatgaccctgaatccagtggacgcgcc
attgttgcgactgaacgttgcctgcaacctcacctaccaccaccggacgctttaaaggcg
acctgtcgtgtattgactcgcggcgatgaggttgagctggagtcacttgctgaaacactt
gcgaaactcggatatgagcgcgtatcgacgattgatcaggagggtacttggagtcgtcgg
ggggacattgttgatattttttcggtcagtagtgagttgccagttcgtcttgaatttttt
ggtgaagagcttgtcaagctacgtgagttcgatccgtcaacgcaacgatctcttgatcct
attgatcaactaaggcttacacctactggctttaatccactcattgctgaccaacttcgc
gccacaatgccagatgggctgtcttccttacttggagagcaagccaccgatgaactctta
gagggtggcacccctgaggggatgcgtcgcctgatgggattggcctggaatgagcccgct
tccctgttggattatctccccgatgtcaccaccgttgtgatcgacgaacggcgccagggt
cttgcccatgggcagctttggttggatcacgcgattgagcaccataaagaaatggccatc
gaggttggtctatctgagcaggatcgtgatttgctttggcccggagttcttcatcgcgac
gttgttgctgcctatggcttagcagaagtgtttgatgggttcgatcttgcagaacttctc
gaggaggacaaccacccaaactccttcgatttcgccagtcgacccgttcctgcttaccca
aatcaattcggcaaactcggtgaattaatcaaggggtttcagagagatcgcatgtctgtc
tggctgatttcggctcagccaagtcgtgccgtcgcccttcttgaagaacatgactgcatc
agtcgatttattcccaacgcaggtgatcttcctgccattgaacgactcatcgaacaaaac
actccagttgccctcaaagcgaaaggcaacgcagaacttgaaggagtgctcttgcccgct
tggcgcgtcgccctggttacagatcgagagttttttggccagcaaactcttacttccacg
gggtatgtccgacgtcgacgcaaagccgcaagtcgcacggtcgatcccaacaagatgcga
ccaggtgattttgttgttcatcgcaaccatggaattggtcgcttcaaagccatggacaaa
ctcgctctttccggtgatgtccgcgactatctggtcgtccaatacgccgatggaattctc
cgagttgcggcagatcaattaggcagcctgggtcgttaccgggcgacgagtgaatcaccg
cctcaactcagtcgcatgggtggagcagcttggacgaaggccaaagaccgggccaagaag
gccgttcgaaaggtggctcttgatcttgtgaagctctatgccgaacgccaacagtcgaat
ggatttgcatttccacctgatggcccctggcagaccgaactggaggagtcatttccctac
gagccaaccccagaccagttgaaatccaccacggacgtcaagcgcgatatggagagggcc
gaacccatggatcgtctggtgtgtggagatgtcggcttcggcaaaactgaagtggcgatt
cgagccatttttaaagccattaccgccggaaagcaggtggccatgttggcgcccacaaca
gttttggcccaacaacattggcggaccctttccgaacgatttgccccctatccgatcaaa
gtggcactcctgaatcgctttcgtacaacgacggaacgtaaaagcattcttgaggggtta
aaacagggaaccattgatgcggtagttggcactcaccaacttttaagtaaaagtacaagc
tttcaacagctcggactcctagttgttgacgaagaacagcgttttggagttaatcagaaa
gaaaaaatcaaagttctccgtaaggatgttgatgttttaactctctcagcaacacccatt
ccccgcaccctttatatgagtttgtcgggtgttcgggagatgagcttaatcacaacacct
ccccctcttcgtcgaccgattaaaacgcatttagcctccctcgacccagaggcggtgcga
agtgcaatccgtcaggaattggatcgtggtggacaagtgttttatgtggttccacgggtg
gaagggattgaagatgttgctaatggccttagaaccatgcttcctggactcaaacttctt
gttgcccatggtcaaatggccgaaggagagttggaaagtgccatggtggccttcaacgct
ggtgaagcagatgtgatgctttgcaccacaattgttgaaagtggtcttgatataccgcgt
gttaatacgattttgattgaagatgcgcatcgatttggattagcgcagctgtatcaactt
cgtggtcgcgtaggtcgcagtggtattcaggctcatgcatggctattttatccaggaaat
gcgtcacttagtgataacgcaaggcaacgactgcgtgctattcaggaatttgcacaactt
ggtagtggttatcaactagcgatgcgagatatggagattcgcggtgtcggcaatcttcta
ggtgttgaacaaagtggtcagatggaaacgatcggatttgacctctatatggagatgttg
caagagtccctagccgagatccagggtcaagacatcccatcggttgatgacacccaggtt
gatttgccagtcactgcttttgtacctgccgactggattactgatcccgatgaaaaaata
gcggcctacagggcagcagccgactgcacatcctccgaagcgctggtggagttggcggcc
ggctgggccgatcgttttggagccattcccgcggctgttcagtcgctgttgcaacttatg
gaactgaagatgctggcgaagcggtgtggtttctccaggatcaagccggagaaacccaac
atcgtgctggaaaccccaatggaagagccagccttccggcttctgcggcaaggactccct
cagcatctccacgggcgctttgtgtaccaacccggcagtggtcttcagcacaaagcattg
gcgcgtggccttggggtgttgccgatggagaaacaattggagcaactgatggattggctg
aagctgatggcagcacaaatccctgacacagacgggcttacggccgaccagcgggaccgc
caaaaagctgagaaaaacgattccgtcatcagggtgtag
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