Synechococcus sp. CC9311: sync_1053
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Entry
sync_1053 CDS
T00390
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
syg
Synechococcus sp. CC9311
Pathway
syg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
sync_1053 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syg03400
]
sync_1053 (recD)
Enzymes [BR:
syg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
sync_1053 (recD)
DNA repair and recombination proteins [BR:
syg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
sync_1053 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
nSTAND3
AAA_22
AAA_16
PhoH
UvrD_C
SLFN-g3_helicase
DEAD
SH3_13
AAA_7
T2SSE
Flavi_DEAD
Herpes_Helicase
ATPase
AAA
Motif
Other DBs
NCBI-ProteinID:
ABI47283
CyanoBase:
sync_1053
UniProt:
Q0IBA7
LinkDB
All DBs
Position
complement(957654..959333)
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AA seq
559 aa
AA seq
DB search
MQSSASDAVIALHRGVLATLQRRMPPEQNSEPLVELLRALTTALSRGEISLQLHDGAKVP
DGIETDGWPRVHREALVASGWLDGDQAVLVLNHNSLSWRRWHGAMQELELELQRRCFQAP
IHATNHGATTSRLSNNNDLSPEQQAAVRAIDRYGVVLLSGGPGTGKTSTVLHMLLRAFEK
QPKLRARLAAPTGKAARRLQDAIRSNPITATLPCTTLHRLLEARPGGFGRHRRNPLELDL
LIVDEMSMVDLELGRALLSALPTHCQLILVGDSAQLPPIGTGAIWQHLQEPNQNRRFKDG
AITLTEVYRNRGALAQMSALLRDQGLIPFWSQLSSLPKTSNITVSYSQTRQIPEAVHAAL
TRHLDHLKEKASALGINAHGQPDQQQAQDLLNILDTLMVLCPRRRGPWGVDAVHQNLLDG
SEPQRWPSGLPVLCSENQPELGLANGDLGVMVGEGVQQRALFLCSDPSGESRHALYHPAR
LRHLEPALALTIHKAQGCEMDKVLLLWPNFDDRQISSLLYTAITRAKQQLLLFADPKALD
LGRSARSWHPEDQSNNGDA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcttcagcgtcggatgctgtcattgcccttcaccgtggggtgctagccacactt
caacggcgcatgccgccagagcaaaacagtgaaccactcgtcgagctcctgcgagcactc
acaactgccctgagcagaggcgaaatctcactgcagcttcacgacggcgccaaggttcca
gatgggatcgaaacggatggctggccaagggttcaccgagaagccttagtggctagtgga
tggctggatggtgaccaagcggttttagtcctgaaccacaacagcctgtcgtggcgtcgc
tggcacggagccatgcaagagctcgaactcgaacttcagcgccgctgtttccaggctcca
atccatgccacaaaccacggcgctactaccagccgcctgtccaacaacaacgatctcagt
cctgaacagcaagcggctgtccgtgccatcgatcgctacggcgtggttctgctcagcgga
ggtccaggaaccggcaaaaccagcacggttctgcacatgctgctccgcgcttttgagaag
caacccaagcttcgagcccggctggccgctcccacaggcaaggccgcacgtcgcctccaa
gacgcgattcgcagcaacccaatcaccgcaacattgccctgcaccactcttcatcgtttg
cttgaagcacgccctggaggctttggccgtcaccgacgcaatccgctggagctggaccta
ctcatcgtcgatgaaatgtcgatggtggatttagagctaggccgtgcactgttgagtgca
ctgccaacccattgccaactgatcttggtgggagatagcgctcagctaccaccgattggt
acaggagccatttggcaacatctccaggaaccaaatcaaaacaggcgtttcaaggatggg
gccatcaccctcacagaggtgtatcgcaatcgaggtgccctcgctcagatgagtgcactg
ctccgtgatcaaggcttgataccgttctggtcacaactcagctcgttgcccaaaacctca
aatatcaccgttagttattcccaaacaaggcagatccctgaggctgtgcatgctgcactc
acgcggcatctcgaccatctcaaggaaaaagcaagcgctttagggatcaatgcgcatggg
caacctgatcaacaacaagcccaagatctcctcaacatccttgacaccttgatggtgctc
tgcccgcgtcgacgggggccatggggcgttgatgccgtccaccaaaacttgctcgatggc
tctgaacctcagcgctggccatcgggcctgccagtgctttgcagtgaaaatcagccggaa
ctcggactcgcaaatggagatcttggggtcatggtcggtgagggggttcaacaacgggcc
ctgtttctctgcagcgacccctctggcgagagtcgacatgcgctttaccaccccgcccgt
cttcggcacctcgagcccgctctcgcactcacaattcataaggctcagggctgcgagatg
gacaaagtgctcctgctctggcctaatttcgacgatcgccaaatcagctcgcttctgtac
acagcgatcacccgagctaaacagcaactgcttttatttgcagatccaaaagcgttggat
ctaggccgctcagcccgatcttggcatcctgaggatcaaagcaacaacggggacgcgtag
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