Synechococcus sp. WH 8109: Syncc8109_1387
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Entry
Syncc8109_1387 CDS
T03783
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syncc8109_1387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syh03400
]
Syncc8109_1387
Enzymes [BR:
syh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syncc8109_1387
DNA repair and recombination proteins [BR:
syh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Syncc8109_1387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHF63750
UniProt:
W0GU79
LinkDB
All DBs
Position
1039968..1043546
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AA seq
1192 aa
AA seq
DB search
MPLRSLVTKLQETALTGELDERSSRPERLLMRGAGRCSRALVASALSKRRGAPLLMVVPT
LEEAGRWTALLELMGWSQASLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGEPNAASWA
IVATERCLQPHLPPPDVLKTKTRTLRKGDEVDLEALGETLAQLGYERVTTIEQEGSWSRR
GDIVDIFPVSSELPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPLIADQLR
ETMPDGLEQLLGAEGTEQILNGGTPEGMRRLMGLAWGHPASLLDYLPDTTTVVIDERRQG
LAHGQQWLSHVEEHHHDMAAEAGLDEADRDRLWPAVLHREIEAAYALAEVFHGFDMAELL
EVDQHPNSFDLASRPVAAYPNQFGKLGELIKGFQTERTAVWLVSAQPSRAVALLEEHDCI
SRFVPNAGDSNAITRLIEQNTPVALKVRGTAELEGLQLPAWRIALVTDREFFGQQSLSSS
GYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGIL
RVAADQLGSLGRYRATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAERQQAA
GFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAI
RAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKSILDGL
KQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPI
PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAVRSAIRQELDRGGQVFYVVPRV
EGIDEVAAGLRAMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPR
VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQL
GSGYQLAMRDMEIRGVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQV
DLPVTAFVPADWITDPDEKIAAYRAASDCLSAEALVELAASWADRYGALPAAVVSLLQLM
ELKLLAKQCGFSRIKPEKPNILLETPMEEPAFRLLRQGLPKHLHGRLIYQAGSGIQHKVM
ARGIGVLPMEKQLEQLMEWLRLMAAQIPDADGKTEAQLQEELRAKNAEVVRV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgccgctccgttccctggtgaccaagttgcaggaaactgcactcaccggtgagcttgat
gagcgctcaagccgccccgaacgtttgttgatgcgcggggctggtcgctgcagccgagct
ctggtggccagcgcgctgtcaaaacggcggggcgcacctctgctcatggtggtgccaacg
cttgaggaagcaggacgctggacggcgctcttggaattaatggggtggagccaggccagc
ctttaccccaccagcgaaggctctccctatgaacccttcgatcccacaagtgaaatcacc
tgggggcaacttcaggttctgagtgacctgctgggggaaccaaacgctgcgtcctgggca
atagtggccacggaacgatgtttgcagccacatctccccccgccggatgttctgaaaacg
aaaacgcgcaccttgcgcaaaggggatgaggttgatcttgaggcactgggcgagacgctg
gcccaacttggctacgaacgggtcaccaccattgagcaggaggggagctggagtcgtcgc
ggcgacattgtcgacatcttcccagtgagcagtgagctgcctgttcgactcgaatttttc
ggagaggagctcgacaagctgcgggaattcgatcccgccagccaacgctcactggacccc
gtcgatgcgcttcgactcacaccaacagggtttgggcctctgatagccgaccagctcagg
gagacgatgcccgacggacttgagcaactgctcggtgctgagggcacagagcagattttg
aacggtggaacaccggaaggcatgcgccggctgatggggctcgcctggggtcaccccgcc
tcgcttctcgactacctgccggacaccacaacagtggtgatcgatgagcgacgccagggc
ttggcccacggacaacagtggctcagccatgttgaggaacatcaccacgacatggctgct
gaggcaggtctggacgaggccgatcgtgatcggctctggccagcggttctgcaccgtgag
attgaagccgcctatgccttggcggaggtcttccatggctttgacatggcagaactactc
gaagtcgaccagcaccccaacagcttcgacctcgctagccgtcctgttgcggcctacccc
aaccaattcggaaaactcggggaactgatcaagggatttcaaaccgagcgcacggcggtt
tggttggtgtctgcgcaacccagccgagcggttgctctgctggaggagcacgactgcatc
agtcgttttgtgccgaacgcgggagacagcaatgccattactcgtctaattgaacagaac
actcccgtcgccttgaaggtgaggggcacggccgaacttgagggtttgcagctgccggcc
tggaggattgccctggtcaccgaccgcgaattctttggtcagcagagcctcagttccagt
ggctatgtacgccgtcgtcgcaaggccgccagccgcacggtggatcccaacaagatgcgc
ccgggcgattttgtggtgcatcgaaaccatggcattggccgcttcaaagccatggaaaaa
cttgcgatgtcaggggacattcgcgactacctcgtggtgcagtacgccgatggaatcctt
cgggttgccgccgatcaactcggaagccttgggcgttacagggccacgagtgaaacacca
ccgcagctcaaccgcatgggtggtacggcttggaacaaggccaaggaacgggcaaagaaa
gcagttcgcaaggttgcccttgatctggtgaagctgtacgccgaacgacaacaggccgca
ggctttgccttccccaccgacgggccctggcaggtggaaatggaggagtctttcccctat
gacccgacgccggatcaactgaaggcaacggccgacgtgaaacgagacatggaacggcag
gagccgatggatcgactggtgtgcggggacgttggcttcggcaaaaccgaagttgccatc
cgcgccatcttcaaagccatcaccgctgggaagcaggtggcgatgctggcaccaacaacg
gtgttggctcaacagcactggcgcacactctcggaacgcttcgcgccgtatccgatcaag
gtggctcttcttaatcgtttccggacggcgtcggaacgcaaatccattctcgatggcctg
aagcagggaaccatcgacgccgtggtgggaacccaccagttgctcagcaaaggagcgtca
ttccaagagcttggtctgttggtggtggatgaagaacagcgcttcggtgtgaaccagaag
gaaaagatcaaagtgctgcgaaaggacgtggacgtgctgacgctgtcggcaactccgatt
cctcgaacgctctatatgagcctttcgggggtgcgggagatgagcctgatcaccacacca
cctcctctgcgccgtccgatcaagacgcacctggcttctctggatccggaggcggtgcgc
agcgccatccgccaggaactggatcgtgggggccaggtgttttatgtggttccccgggtg
gaaggaatcgacgaggtagctgcaggtctacgggcgatgcttccaggcctgaagcttttg
gtggctcacggtcagatggctgagggcgaactggagaacgccatggtggcgttcaacgcc
ggcgaagccgacgtgatgctctgcaccacgattgtggagagcggtctggacattcctcgc
gtcaacacgatcctgatcgaggacgcccaccgttttggcttggcccagctgtaccaattg
cggggtcgggtcggccgcagtgggattcaggcccatgcctggttgttctatccgggtaac
gcatcgctgagcgacaccgctcgtcagcggctgcgcgccattcaggagttcgcccaactg
ggcagtggatatcagctcgccatgcgggatatggagatccgtggagtcggcaatctcctc
ggcgtgcagcagagcggccagatggaaaccatcggctttgacctctacatggaaatgctg
caggaatccctggccgaaattcagggtcaagacatccccagcgttgaagacacccaggtg
gacctccccgtcacggccttcgtgcctgcagactggataactgatcctgatgagaagatt
gcggcctaccgggctgcctccgactgcctctccgccgaggccctggtggagctggctgcg
agttgggccgatcgctatggagcgctgcccgctgccgtggtgtcgcttctgcagctgatg
gaactcaaacttctggcgaagcagtgcggcttttccaggatcaaaccggaaaagcccaac
atcctgcttgaaactcccatggaggaaccggcgttccgtttgctgcgccaggggttgccc
aagcatctgcatggccgtttgatttatcaggctggcagcggcatccagcacaaggtgatg
gcccgcggtatcggtgtactccctatggagaagcaactggaacagctaatggaatggctg
cgtctgatggcagcccagattcccgatgcagatggcaaaaccgaagcacagctgcaggaa
gagctgcgtgccaagaacgcggaggtagttcgggtctga
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