Synechococcus sp. WH 8109: Syncc8109_1840
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Entry
Syncc8109_1840 CDS
T03783
Symbol
trmD
Name
(GenBank) tRNA (guanine-N1)-methyltransferase
KO
K00554
tRNA (guanine37-N1)-methyltransferase [EC:
2.1.1.228
]
K01770
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:
4.6.1.12
]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh00900
Terpenoid backbone biosynthesis
syh01100
Metabolic pathways
syh01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
Syncc8109_1840 (trmD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syh03016
]
Syncc8109_1840 (trmD)
Enzymes [BR:
syh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.228 tRNA (guanine37-N1)-methyltransferase
Syncc8109_1840 (trmD)
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.12 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Syncc8109_1840 (trmD)
Transfer RNA biogenesis [BR:
syh03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
Syncc8109_1840 (trmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YgbB
tRNA_m1G_MT
SPOUT_MTase
Motif
Other DBs
NCBI-ProteinID:
AHF64192
UniProt:
W0GVF4
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All DBs
Position
complement(1347278..1348483)
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AA seq
401 aa
AA seq
DB search
MAPYRLDVVSLAPQAFAPLLELGVIGRAFNAGIAELHLHNPRDFATDRHRKVDDEPYGGG
AGMVLKPEPVFAAMEAIPRSLRSRVLLMSPQGRPLQQADLQRWSNDHDQLVFLCGHYEGF
DERIRGLADEEVSMGDFVLTGGELPAMTVINGVVRLLPGTVGTADSLVEESHSALLLEHP
HYTRPADFRGMTVPDVLRSGDHGAIARWRQAQREQRTRERRPDLFVRWQTATMNDPSDPA
MELRIGNGYDIHRLVPGRALILGGVTLDHPDGLGLDGHSDADVLVHAVMDALLGALALGD
IGKYFPPTDPQWEGADSLKLLDQVVKLVKERGWSVVNIDAVVIAERPKLKPHIAEMSSRM
ASAIGIAPDAVGVKATTNEGLGPEGREEGISCQAVALLQRS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcgccctaccgccttgatgtggtgagcctggcgccgcaggcgtttgctcctctgctg
gagctaggggtgatcggtcgtgccttcaacgcgggcattgccgagttgcatctgcataac
ccgagggacttcgccacagatcgccatcgcaaggtggacgacgagccctacgggggcggt
gccggcatggtgctcaagcccgagccggtgttcgccgcgatggaggctattccccgtagt
cttcgcagccgggtgctgttgatgtcaccgcaggggcgccccctgcagcaggcagatcta
cagcgttggtctaatgaccatgatcaactggtcttcctctgcggtcactacgagggtttc
gacgagcggattcgcggcctggccgatgaggaggtgtcgatgggtgatttcgtcctcacc
ggtggtgagctgccggcgatgacggtgatcaacggtgttgtgcgcctgctgcccggcacg
gtggggacggccgattccctggtggaggaaagccacagtgcactcctcctggaacacccg
cactacacccgccccgccgacttccgcggcatgaccgttccggatgtgctgcgcagtggc
gaccacggtgccatcgcccggtggcgccaggcgcagcgggagcagcgcacccgcgagcgg
cggcccgatctgtttgtccgctggcagaccgcgacaatgaatgacccttcagatcccgcc
atggagctgcgcatcggcaacggatacgacatccatcggctggtgcccggacgggccctc
atcctggggggtgtgactctggatcatcccgatggccttggcctggatggccacagcgat
gccgatgtgctggtgcatgcggtgatggatgcgctgctcggggccctcgcccttggtgac
atcgggaagtacttcccccccaccgatccccaatgggaaggggccgacagcttgaagctg
ctggatcaagtggtgaagctggtgaaggaacgcggctggtcggtggtgaacatcgatgcg
gtggtgattgctgagcgccccaagctcaagccgcatatcgccgagatgagcagccggatg
gcgtcagcgatcggcattgcccccgatgccgtgggtgtgaaggccaccaccaacgaaggc
ttgggtccggagggacgggaagagggcatcagttgccaggctgtggctctgctgcagcgg
agctga
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