Synechocystis sp. PCC 6714: D082_33540
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Entry
D082_33540 CDS
T03386
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syj
Synechocystis sp. PCC 6714
Pathway
syj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D082_33540 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syj03021
]
D082_33540 (rpoC1)
03400 DNA repair and recombination proteins [BR:
syj03400
]
D082_33540 (rpoC1)
Enzymes [BR:
syj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D082_33540 (rpoC1)
Transcription machinery [BR:
syj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D082_33540 (rpoC1)
DNA repair and recombination proteins [BR:
syj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D082_33540 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
AIE75882
UniProt:
A0A068N731
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All DBs
Position
complement(3333058..3334938)
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AA seq
626 aa
AA seq
DB search
MKAQSEPRFDYVKIAIASPERIRQWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCE
KIFGPSKDWECWCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKG
IPSYLSILLDMALRDVEQIVYFNAYVVLNPGNASNLQYKQLLTEDQWVEIEDQIYAEDSE
LEGIEVGIGAEAVQRLLAELQLEEVAEKLREEILASKGQKRAKLIKRLRVIDNFIATKSQ
AEWMTLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPNLKIYQCGLPREMAIELFQPFVIHRLIKLGIVNNIKAAKKLILKGDPQIWGVLE
EVITGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQCEARLLMLACHNVLSPATGKPIVAPSQDMVLGCYYLTAENPNAQKGAGRYFAGIED
ALRAYDHGQVDLHSQIWVRHLDDDVVTEKPDTEVIKTEDLGDGTVMKYYRERKVREGVDG
EIITQYIQTTPGRIIYNKTIAEALVF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcccaatcagaacctcggtttgattacgtcaaaattgcgatcgcctcccccgaa
agaatccgccagtggggggaacgcaccctgccgaatggaaccgtggtgggggaagtgacc
aaacccgaaaccattaactaccggacgttaaaaccggaaatggacggtttgttctgcgaa
aaaatctttggtccctccaaggattgggagtgctggtgcggcaaatataaacgggtacgg
caccggggcattgtctgcgagcgttgcggcgtagaagtaacggaatcccgagttcgtcgc
caccgcatgggctacatcaaacttgcggccccggtcacccacgtttggtatctcaaaggc
attcccagctacctcagcattcttctggacatggccctgcgggatgtggagcaaattgtt
tacttcaacgcctacgtggtgctcaaccccggtaacgccagcaatctgcagtataagcaa
ctgttgacggaagaccagtgggtggagatcgaagaccagatttatgccgaagactcggag
ctagagggcattgaagtgggcattggagccgaagcagtgcagaggcttttggcagaattg
caactggaagaagtggcggaaaagctacgggaagaaatcctagccagtaaagggcaaaag
cgggccaagctaattaaacgcctgcgggttatcgacaacttcatcgccaccaaatcccaa
gcggaatggatgacattggatgtaattcctgtcattccaccggatctacgccccatggtg
caattagatgggggacgctttgccacctctgacctaaatgatctgtatcggcgggtgatc
aaccgcaataaccgtttagcccgtttacaggaaatcctggccccagaaattattgtccgt
aacgagaaacggatgctccaggaagcagtggatgctctgattgacaacggtcgtcggggc
cgcaccgtagtgggggccaataaccgggccctgaaatccctttctgacatcattgaaggt
aaacagggtcgtttccgtcaaaacctcttgggtaaaagggtagactactccggtcgttcc
gttattgtggtgggccccaacctaaaaatttaccagtgtggcctgccccgggaaatggcg
atcgagctcttccagccttttgtcattcaccgtttgatcaaactgggcattgttaacaac
atcaaagcggccaagaaattaattctcaagggagacccacaaatctggggtgtgctggag
gaagttattaccggccacccagttatgctcaaccgggctcctactctgcaccgtttgggg
attcaagcctttgaaccgattctggtagaagggcgagcaatccaactccatcccctggtg
tgtcccgcttttaacgctgacttcgacggtgaccagatggcggtgcacgtgcccctatct
ttggaagcccagtgtgaagcccggctgttaatgcttgcttgccataacgttctttccccg
gccaccggtaaacccattgtggctccctcccaggacatggtattgggctgttattacctc
acagcggaaaatcccaacgcccaaaagggagcggggcgttactttgccggtattgaggat
gccctacgggcctacgaccatggccaggtggatctccactctcagatttgggttcgccac
cttgatgatgatgtggtgaccgaaaaaccggacacagaggtgattaaaactgaagatcta
ggggatggcacggtgatgaaatattaccgagaacggaaagttcgggaaggagtcgatggg
gaaatcattacccagtatattcaaacgactccggggcggattatttacaacaaaacgatc
gccgaagcgctggtcttctag
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